PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01010035001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C3H
Protein Properties Length: 995aa    MW: 111270 Da    PI: 9.2046
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01010035001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.81.4e-06314333525
                        --SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                        +Cr+f + G C++G++C+F H
  GSVIVT01010035001 314 RCRDFVA-GRCSRGSQCRFLH 333
                        7******.************* PP
2zf-CCCH20.58.7e-07405424525
                        --SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                        +C++f++ G C++G++CkF+H
  GSVIVT01010035001 405 RCNDFLK-GKCHRGSSCKFSH 424
                        7******.************* PP
3zf-CCCH20.11.2e-06452472526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        lC++fa  G C  GdrC+F+H+
  GSVIVT01010035001 452 LCKYFAM-GKCFNGDRCRFSHD 472
                        8**9999.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.226.101.2E-8140IPR029045ClpP/crotonase-like domain
SuperFamilySSF520961.22E-141106IPR029045ClpP/crotonase-like domain
Gene3DG3DSA:3.90.226.101.3E-1050112IPR029045ClpP/crotonase-like domain
PROSITE profilePS5010314.446309336IPR000571Zinc finger, CCCH-type
SMARTSM003568.2E-4311335IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-5314334IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.704400427IPR000571Zinc finger, CCCH-type
SMARTSM003560.074401426IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-4405424IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-4447473IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.732447474IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6450472IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-5452472IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009536Cellular Componentplastid
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 995 aa     Download sequence    Send to blast
MGSVVGEKIT RLIEYATNEF LPLILVRSFG GAHMQEGILV CWEISLLPNP ISYIAFAGKR  60
VVEQTLKKTI PEGSQVAEYL FHKGLFDPIV PRNTLKGVLS GLFQLHAFFP LNKKKKSSIS  120
LREFTMSGSV RKRKSKWDLK EESQFAKISS NNVKAGDSNL DDWSDLEAND GLKSNDNFEL  180
DSWEPLSGNG GAQKDVRDNR EFNEVSETMR GWVADNSYSM RTSPSFDGRV QKRYGRSPRN  240
NWRQSNRGRS RSRSRSRGRS KTLGRSVSSS RSWSRSRSRS RSRSLSRSPH VDFKRDSYGF  300
SERSRNGSGV SSQRCRDFVA GRCSRGSQCR FLHQDNLNYR DGGRSEIDQA ESWESRQEHR  360
RASRYADAEG PIDYPRDKVA RGGYGNQYDG EKDVPVRNNS RSNVRCNDFL KGKCHRGSSC  420
KFSHHGASGD RYDRHDRDHE RKREPHRVGG ILCKYFAMGK CFNGDRCRFS HDDPPCDSPE  480
GRPRDGKWGH NLDDENKPWE DTKWNGAAAL DIAKSSEWGS NDNGNKNFTD SMVADKSIGN  540
SWGQSLDNEN KPWATSASKD KASEGDSWGS SHWRARSNIA NTGIPELMSS AKLSVKEEPL  600
LTPLGSQAQT LNGISRPAHE QNIMQDTSSL QLATSFMRPT VSGDSYVQQH LGKSGDNTAM  660
VDGSSHDRVN FSVHTLHVPR QSFNKDGDNL GSQPPLSFNE TSQSQHMCNL NPLNGHTIDL  720
NGPVERINSP LNLQSQTQFC QGESVETPEM MECKVPQVIS GTPRNFITNN PVGQMSSLSE  780
SLAQVFGNGQ QLLQPYAVLN TPNSMDLVQP HGYSLNPSEQ KTLVPSKGFS LSMMSASAGT  840
NSAEMIKIGN SEDEHCKSPK MKQQEPVANS EVKGNIKEVA EECRQELEKG HPENLDADGG  900
VDEGNRIKDE KGMRIFKNAL VEFVKEILKP TWKEGQMSRE VHKTIVKKVV DKVTGTIQGE  960
HVPKTQEKID QYLSYSKPKL TKLVQAYVEK FLKS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113133KKKSSISLREFTMSGSVRKRK
2248260RSRSRSRSRGRSK
3274282RSRSRSRSR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.166990.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4633850.0AM463385.1 Vitis vinifera contig VV78X098029.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278177.10.0PREDICTED: zinc finger CCCH domain-containing protein 55
RefseqXP_010664885.10.0PREDICTED: zinc finger CCCH domain-containing protein 55
TrEMBLF6H0A20.0F6H0A2_VITVI; Uncharacterized protein
STRINGVIT_18s0001g15570.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1027869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.14e-13C3H family protein