PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP15490_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRF
Protein Properties Length: 341aa    MW: 37441.4 Da    PI: 8.3305
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP15490_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.52.8e-24217261145
                            WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                                    d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  GSMUA_AchrUn_randomP15490_001 217 DPEPGRCRRTDGKKWRCSREAVADQKYCERHINRGRHRSRKHVEG 261
                                    79****************************************996 PP
2QLQ44.74.1e-16148179233
                            QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlq 33 
                                    +FT++Q+ +L++Q+l+yK+++an+ +Pp L  
  GSMUA_AchrUn_randomP15490_001 148 PFTPTQWLELERQALIYKHIVANVAIPPSLFI 179
                                    8***************************9965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.3E-7147183IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.7E-12148180IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.065148183IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.08217261IPR014977WRC domain
PfamPF088798.5E-21218260IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MDFGGVVDMD MLVAASSDAG GVYSSSMTSS DTELSRQRVL SGSSLQKNET SPEAEDHDMR  60
CLKLARTEPK VAPTAKVAPF LVPSYPYLFP DGAQMLSFSS TFKQEATPPD GTLPYQHHRS  120
APTSTPSCLC SGSFDVNMNE VLARVRWPFT PTQWLELERQ ALIYKHIVAN VAIPPSLFIP  180
FRTSLSTFGF SSLPVGSFGS STFGWGLYHQ GYSGNDDPEP GRCRRTDGKK WRCSREAVAD  240
QKYCERHINR GRHRSRKHVE GRTSHAMKAI PALAPSPSVS ANQSSGISGK LATSQHQTES  300
LQTNMTNCCP AQVLCIWLIS NLNINDHGLL LKLILLFNLA N
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018677246.10.0PREDICTED: growth-regulating factor 7-like isoform X3
SwissprotQ6AWY22e-59GRF7_ORYSJ; Growth-regulating factor 7
TrEMBLM0U9F80.0M0U9F8_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP15490_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42903568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.17e-48growth-regulating factor 2