PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P12590_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 324aa    MW: 36863 Da    PI: 7.7601
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P12590_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.42.8e-093454526
                           --SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                           +C f+++ G C+yG+rC++ H+
  GSMUA_Achr9P12590_001 34 ICTFYQK-GVCSYGNRCRYDHV 54
                           7******.*************7 PP
2zf-CCCH22.81.6e-07106128326
                            S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                            +++C+ fa++G C++GdrC+ +Hg
  GSMUA_Achr9P12590_001 106 QPICS-FAASGKCPRGDRCPHIHG 128
                            68899.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.033128IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-4127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-7326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3422956IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-43055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-53053IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-43453IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-63454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.948103130IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-4104129IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-5106128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4109128IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.78E-12160236No hitNo description
Gene3DG3DSA:3.30.40.101.6E-9167232IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00373171231No hitNo description
PROSITE profilePS5008912.297172230IPR001841Zinc finger, RING-type
SMARTSM001844.2E-7172229IPR001841Zinc finger, RING-type
PfamPF000972.2E-7172229IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180196205IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.732259288IPR000571Zinc finger, CCCH-type
SMARTSM003560.027259287IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MSKRILCKFF LHGACLKGEY CEFSHDWQDQ PNNICTFYQK GVCSYGNRCR YDHVKVSRQQ  60
TSRLSSLNTA SHVTSDFHQV TLPAVVSLTR EYNPEPSTSV DVPADQPICS FAASGKCPRG  120
DRCPHIHGDL CSICGKHCLH PFRPDEREEH IKMCHKNNKH LEALKCSQEI ECSVCLEHVL  180
SKPTAAERKF GLLSECDHPF CISCIRNWRS NSPASGMDVN SALRACPICR KLSYFVIPSV  240
IWYSTKEEKQ EIVDSYKIKL KSIDCKYFDF GNGTCPFGTS CFYKHAYRDG RLEEVVLRHL  300
DTEDGSTVIA KDIRLSDFFN GLHL
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2260390.0AC226039.1 Musa acuminata clone BAC MA4-3G18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018673890.10.0PREDICTED: E3 ubiquitin-protein ligase makorin-like isoform X3
SwissprotQ5ZA071e-172C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLM0TZR80.0M0TZR8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P12590_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53263356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-158C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]