PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr8P05300_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NF-YB | ||||||||
Protein Properties | Length: 153aa MW: 15754.4 Da PI: 7.6011 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 78.4 | 9.7e-25 | 25 | 68 | 2 | 45 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisf 45 reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf GSMUA_Achr8P05300_001 25 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISF 68 89*****************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.6E-22 | 22 | 68 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.1E-18 | 27 | 97 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.2E-14 | 30 | 68 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MVDSDNESGG PNNAAGSGGE FSSPREQDRF LPIANVSRIM KKALPANAKI SKDAKETVQE 60 CVSEFISFDY VEPLKVYLQR FREMEGEKMG ASSGSHKEAG GAGVGMYGGG GAMYGSPTSA 120 TSYHHQMSMG GKGSSAGGAG GSSSAGFGRQ GRV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 5e-24 | 19 | 83 | 1 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956383 | 4e-53 | EU956383.1 Zea mays clone 1561739 nuclear transcription factor Y subunit B-3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009412257.1 | 7e-70 | PREDICTED: nuclear transcription factor Y subunit B-10-like | ||||
Swissprot | Q75IZ7 | 2e-43 | NFYB8_ORYSJ; Nuclear transcription factor Y subunit B-8 | ||||
TrEMBL | M0TMT3 | 1e-105 | M0TMT3_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P05300_001 | 1e-106 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18750 | 5 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47640.1 | 2e-36 | nuclear factor Y, subunit B2 |
Publications ? help Back to Top | |||
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