PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr7P20800_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ERF | ||||||||
Protein Properties | Length: 151aa MW: 15937.6 Da PI: 8.027 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.1 | 3.9e-17 | 44 | 92 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr +k +g+WvAeIr+p +kr r++lg++ ta Aa+a++ a +l+g GSMUA_Achr7P20800_001 44 FRGVRMRK-WGKWVAEIREP---NKRSRIWLGSYSTAVAAARAYDTAVYCLRG 92 8*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.9E-31 | 43 | 101 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.537 | 43 | 100 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-22 | 43 | 102 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.7E-35 | 43 | 106 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-10 | 44 | 92 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.03E-27 | 44 | 101 | No hit | No description |
PRINTS | PR00367 | 1.6E-11 | 44 | 55 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-11 | 82 | 102 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MEGQLCSTSN SGEPRKPPPP GAGRRVTGGS EGDGGGGGGS DRTFRGVRMR KWGKWVAEIR 60 EPNKRSRIWL GSYSTAVAAA RAYDTAVYCL RGRSARLNFP DEILAEDLEA ESFSGSGGAG 120 TCAMSAASIR KKATENPDLN QEPAPESSDV D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-17 | 34 | 103 | 4 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009410362.1 | 3e-98 | PREDICTED: ethylene-responsive transcription factor RAP2-9-like | ||||
Swissprot | Q8LC30 | 6e-35 | RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1 | ||||
Swissprot | Q9FH94 | 6e-35 | ERF10_ARATH; Ethylene-responsive transcription factor ERF010 | ||||
TrEMBL | M0TJB7 | 1e-104 | M0TJB7_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P20800_001 | 1e-105 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3943 | 30 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46768.1 | 2e-23 | related to AP2 1 |
Publications ? help Back to Top | |||
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