PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P16840_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

G2-like

Protein Properties

Length: 93aa MW: 10407.1 Da PI: 11.0583

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P16840_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.8	2.5e-33	18	72	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWt+eLHerFv av+qLGGs++AtPk +l++m+v+gLt++h+kSHLQkYRl GSMUA_Achr7P16840_001 18 RQRLRWTNELHERFVGAVTQLGGSDRATPKGVLRIMGVPGLTIYHIKSHLQKYRL 72 58****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.899	15	75	IPR017930	Myb domain
SuperFamily	SSF46689	1.22E-18	16	73	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.3E-32	18	73	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-25	19	73	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-8	20	71	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 93 aa Download sequence Send to blast
MNLKNGGNSS TNPNLLSRQR LRWTNELHER FVGAVTQLGG SDRATPKGVL RIMGVPGLTI 60 YHIKSHLQKY RLAKYIPDSS ADGKYLMKAL NKI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-26	18	75	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-26	18	75	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-26	18	75	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-26	18	75	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009409861.1	1e-55	PREDICTED: myb family transcription factor PHL7-like
Refseq	XP_009409862.1	1e-55	PREDICTED: myb family transcription factor PHL7-like
Refseq	XP_009409863.1	1e-55	PREDICTED: myb family transcription factor PHL7-like
Refseq	XP_018684626.1	1e-55	PREDICTED: myb family transcription factor PHL7-like
Swissprot	Q9SJW0	2e-38	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	M0TI71	5e-62	M0TI71_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P16840_001	8e-63	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4408	36	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	7e-41	G2-like family protein