PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr7P13620_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | C3H | ||||||||
Protein Properties | Length: 262aa MW: 28761.2 Da PI: 7.2244 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.7 | 8.5e-08 | 126 | 148 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C +f++tG Ck+Gd C aHg GSMUA_Achr7P13620_001 126 TPCADFRKTGGCKRGDACELAHG 148 69****************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-6 | 118 | 150 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-4 | 122 | 149 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.87E-5 | 122 | 152 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.145 | 122 | 150 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.7E-6 | 126 | 148 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.1 | 158 | 181 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.756 | 158 | 182 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MMLIGRGIGH HNPTVQVPPW SPSDDPTGGN ATSSHLPVSG VATGDGLLDE ATLAALQLYL 60 GCEEEAAAEE APAVVDAYAS DEFRMYEFKV RRCARGRTHD WTECPLAHPG EKARRRDPRK 120 HRYSGTPCAD FRKTGGCKRG DACELAHGVF ECWLHPERYR TQPCKDSTAC RRRVCFFAHT 180 PDQLRVLPSQ HQQTTTSASA TAVESYDGSP LRQQSSMQSY LSKNFVCSTT ATLISPPKTP 240 TTAILDRAEA TPDVGWVSEL LK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009409364.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 2-like | ||||
Swissprot | Q9FU27 | 1e-86 | C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2 | ||||
TrEMBL | M0TH99 | 0.0 | M0TH99_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P13620_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1578 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 2e-72 | C3H family protein |
Publications ? help Back to Top | |||
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