PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr7P09370_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | G2-like | ||||||||
Protein Properties | Length: 378aa MW: 41547.8 Da PI: 6.7419 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 98.2 | 6e-31 | 115 | 168 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+av++LGG+++AtPk +l++m+v gL ++hvkSHLQ+YR+ GSMUA_Achr7P09370_001 115 PRLRWTPDLHISFVHAVDRLGGPDRATPKLVLQVMNVRGLNIAHVKSHLQMYRS 168 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.085 | 111 | 171 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-28 | 111 | 169 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.08E-13 | 114 | 169 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.9E-22 | 115 | 170 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.0E-6 | 116 | 167 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MAEAVEAAAV DVCGDEEKSE ERSTRSCRSA THKRRLDELD LNEGVGSDGG SGDDDDDDDG 60 GSVTEVAGGA SSSNNSSSSN NDSGSNCDTK SGSPAEGVDQ IRMPTVRQYN RSKLPRLRWT 120 PDLHISFVHA VDRLGGPDRA TPKLVLQVMN VRGLNIAHVK SHLQMYRSKK LDNAWQDKSP 180 FFSAVSPMDA YLRRGLHEMS YQRTAASSYQ SSGMENSGYF QWSPQETDRF YSLMQRLKPF 240 DLKTGNYGYT TRILLMSVIL PSSSSSQTLI PKGSVVLFHP HSRSQDQGLF FGEDGKPSSS 300 QLFDARNPRS RHHYLQGIME GSRSGKFDGI GSSSLRPFST STAPVPGWKN SSNSYSLKDN 360 MSSLHDPIIV DDRLEVPC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-18 | 116 | 170 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-18 | 116 | 170 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-18 | 116 | 170 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-18 | 116 | 170 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009408891.1 | 0.0 | PREDICTED: two-component response regulator ARR18-like isoform X1 | ||||
TrEMBL | M0TG25 | 0.0 | M0TG25_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P09370_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2754 | 36 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42660.1 | 2e-33 | G2-like family protein |