PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr7P02770_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | bHLH | ||||||||
Protein Properties | Length: 488aa MW: 53291.5 Da PI: 6.5662 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.2 | 1.7e-09 | 284 | 331 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq GSMUA_Achr7P02770_001 284 SHSLAERVRREKISQRMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 331 8*************************9....556*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.44E-16 | 278 | 348 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.03E-11 | 278 | 335 | No hit | No description |
PROSITE profile | PS50888 | 15.542 | 280 | 330 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-16 | 280 | 347 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-6 | 284 | 331 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-10 | 286 | 336 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 488 aa Download sequence Send to blast |
MNSGSSDRSP KCFLNQNWDR SVDHISQFGS ALGSFMSPQS SFELERGLQR IGHLSEEVPP 60 QSHFMDSSGN SQALGGLVIA GNLALAHLDQ FPADPGFAER AARFSSFDGQ SYGWFSGHFE 120 LPGSGKPSTA AIIQSLTASG LQIGHLESNR QIPVSNGLQL KMNSAGPAIS REEMSLSDPI 180 SASNGKKRKA PSKSKEKDAA SPKPSTDPPK VADEEDSDTK RCRSSGKIHE IGIDNVKPKL 240 EQNDGARSNG NAEQKQRKAG NDKPSEPPKD YIHVRARRGQ ATDSHSLAER VRREKISQRM 300 KLLQDLVPGC SKVTGKAVML DEIINYVQSL QRQVEFLSMK LATVNPQLDF DNLANLRAKD 360 MIQIGGPVPN SAYSPEMSMV SSYADVPQQK DILHSIATNG MDFHCSMNLL DSTGHQDLNA 420 HQACLGGFGD SSSQLGFFWE DDLQNIVQMG IGQDQEIVAS SHNFHGGWKS RFNNCILILP 480 FIQLDDSW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009408340.1 | 0.0 | PREDICTED: transcription factor bHLH77 | ||||
TrEMBL | M0TE67 | 0.0 | M0TE67_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P02770_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP919 | 38 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48560.1 | 1e-65 | bHLH family protein |