PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr7P00580_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | WRKY | ||||||||
Protein Properties | Length: 149aa MW: 16867.1 Da PI: 9.2516 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105.7 | 2.4e-33 | 10 | 67 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK+vk+s+fprsYYrCt+++C+vkk+ver+++dp++v++tYeg+H h+ GSMUA_Achr7P00580_001 10 EDGYRWRKYGQKVVKNSPFPRSYYRCTHSKCNVKKRVERCSQDPSIVITTYEGQHCHH 67 8******************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.2E-33 | 2 | 68 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.28E-29 | 3 | 67 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.459 | 4 | 69 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-38 | 9 | 68 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.1E-26 | 10 | 67 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MTKSEVDHLE DGYRWRKYGQ KVVKNSPFPR SYYRCTHSKC NVKKRVERCS QDPSIVITTY 60 EGQHCHHTVS ASPRTDASPS QQLASSAPQI CLPAMQFHRN PPVLPVIRPG QVIGPRYEER 120 TSMAMERTSP APTDEGLLDD VVPSGMRRT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-27 | 2 | 66 | 10 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 1e-27 | 2 | 66 | 10 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009408611.1 | 1e-108 | PREDICTED: probable WRKY transcription factor 57 | ||||
Swissprot | Q9C983 | 3e-40 | WRK57_ARATH; Probable WRKY transcription factor 57 | ||||
TrEMBL | M0TDJ8 | 1e-107 | M0TDJ8_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P00580_001 | 1e-108 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2125 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69310.2 | 5e-41 | WRKY DNA-binding protein 57 |
Publications ? help Back to Top | |||
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