PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P04270_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bZIP

Protein Properties

Length: 383aa MW: 41595 Da PI: 8.4234

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P04270_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47.6	3.7e-15	305	357	5	57
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L+++N++L+++ e+ ++ + GSMUA_Achr6P04270_001 305 RRQRRMIKNRESAARSRARKQAYTMELEAEVEKLKEQNQELQEKQAEMMEMQK 357 69****************************************99888877755 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.8E-12	301	365	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.231	303	354	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.63E-11	305	354	No hit	No description
Pfam	PF00170	5.1E-13	305	357	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.2E-16	305	354	No hit	No description
CDD	cd14707	7.76E-26	305	359	No hit	No description
PROSITE pattern	PS00036	0	308	323	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MNLENFGGGR GADREAPPLA RQGSIYSLTF DELQTTLGGL GKDFGSMNMD ELLKNVWTAE 60 ETYAMTAAFG EGRGGTAAGP GLQQQGLLTL PRTLSQKTVD EVWRDLAGGP TASYVQGIAG 120 GGADVPQQTS LGEITLEEFL VKAGVVREDS TPSPALPRSA GNRSSSTNVL FDDMPTINNA 180 TGLALGFEHR SNTNTINACI PRSSAADLGM MVTVARPYAA PIPVRSRGLV SFDDAEMTDG 240 LMTGIIGPDR ARVVVVTGSP GNHLSPDILE KANRDLSSVP KVPYMFSGGM RGRKRSGSVE 300 KVIERRQRRM IKNRESAARS RARKQAYTME LEAEVEKLKE QNQELQEKQA EMMEMQKNQD 360 LQMISQLHGT KKHLLRRTQT GPW

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MNLENFGGGR GADREAPPLA RQGSIYSLTF DELQTTLGGL GKDFGSMNMD ELLKNVWTAE  60
ETYAMTAAFG EGRGGTAAGP GLQQQGLLTL PRTLSQKTVD EVWRDLAGGP TASYVQGIAG  120
GGADVPQQTS LGEITLEEFL VKAGVVREDS TPSPALPRSA GNRSSSTNVL FDDMPTINNA  180
TGLALGFEHR SNTNTINACI PRSSAADLGM MVTVARPYAA PIPVRSRGLV SFDDAEMTDG  240
LMTGIIGPDR ARVVVVTGSP GNHLSPDILE KANRDLSSVP KVPYMFSGGM RGRKRSGSVE  300
KVIERRQRRM IKNRESAARS RARKQAYTME LEAEVEKLKE QNQELQEKQA EMMEMQKNQD  360
LQMISQLHGT KKHLLRRTQT GPW

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009403361.1	0.0	PREDICTED: bZIP transcription factor TRAB1
Swissprot	Q9M7Q4	1e-91	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	M0T425	0.0	M0T425_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P04270_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP706	38	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	2e-65	abscisic acid responsive elements-binding factor 2

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]