PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P03500_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | WRKY | ||||||||
Protein Properties | Length: 515aa MW: 56708.6 Da PI: 7.989 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.1 | 3.3e-32 | 120 | 177 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgse+prsYY+Ct+ +C+vkkkvers+ +++++ei+Y+geHnh+k GSMUA_Achr6P03500_001 120 EDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCQVKKKVERSQ-EGHFTEIIYKGEHNHPK 177 8****************************************.***************85 PP | |||||||
2 | WRKY | 105.4 | 3e-33 | 308 | 366 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+a+d k v++tYeg+Hnh+ GSMUA_Achr6P03500_001 308 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCNVRKHVERAAHDLKSVITTYEGKHNHD 366 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 23.502 | 114 | 178 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 7.2E-29 | 115 | 178 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.72E-26 | 118 | 178 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.6E-36 | 119 | 177 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.2E-25 | 120 | 176 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.6E-37 | 293 | 368 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.01E-29 | 300 | 368 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 37.711 | 303 | 368 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-38 | 308 | 367 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-25 | 309 | 366 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 515 aa Download sequence Send to blast |
MRRRNLDVTS FFCPLREKKL RFPSHRVKKG DGATSSPHFF CPHGGKKHCL NDARFLLPAT 60 SLRLLLPAQM RRKFNLQESK DAIPDSFMSS DRSLPLDEQQ EGDRDLRGEL SSVAVGAPAE 120 DGYNWRKYGQ KQVKGSEYPR SYYKCTHLNC QVKKKVERSQ EGHFTEIIYK GEHNHPKPPP 180 NRRSGVLLSN PFNDAEIDGH DWQGDLEATS SAHVTAECCD PSAAVQQRPD GQRLSSDAID 240 VSSTMSSGED EDDQATHGSV SLGCDGEGDE TESKRPKLDT SAIEMNAASR AVREPRVVVQ 300 TTSEVDILDD GYRWRKYGQK VVKGNPNPRS YYKCTHPGCN VRKHVERAAH DLKSVITTYE 360 GKHNHDVPAA RNSGHPSSSP SNTTSNAGPQ PHGLLPRAES TQGGLVRFEG HAPLGTFGLP 420 GMEQLRPPTS FTFAMGQPGL MNLTMAGFGP LAPTKMSVPP SVHSYIGHGP PVEGLMIPKG 480 EPNEEPMPET RLPMLNGGPV YHQMTMNGVP LRPQL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 8e-38 | 120 | 369 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 8e-38 | 120 | 369 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 17 | 27 | KKLRFPSHRVK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM050869 | 8e-48 | KM050869.1 Astrocaryum standleyanum isolate PL101 WRKY transcription factor 12 (WRKY12) gene, partial cds. | |||
GenBank | KM050870 | 8e-48 | KM050870.1 Astrocaryum standleyanum isolate PL117 WRKY transcription factor 12 (WRKY12) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009403265.1 | 0.0 | PREDICTED: probable WRKY transcription factor 34 isoform X3 | ||||
Refseq | XP_009403266.1 | 0.0 | PREDICTED: probable WRKY transcription factor 34 isoform X3 | ||||
Refseq | XP_018683620.1 | 0.0 | PREDICTED: probable WRKY transcription factor 34 isoform X3 | ||||
Swissprot | Q9FG77 | 1e-115 | WRKY2_ARATH; Probable WRKY transcription factor 2 | ||||
TrEMBL | M0T3U8 | 0.0 | M0T3U8_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P03500_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2075 | 38 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 1e-116 | WRKY DNA-binding protein 2 |
Publications ? help Back to Top | |||
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