PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P01020_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | C3H | ||||||||
Protein Properties | Length: 261aa MW: 28978.9 Da PI: 8.2168 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.9 | 2e-09 | 72 | 94 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + C++f++ G Ck+Gd C FaHg GSMUA_Achr6P01020_001 72 SAACPDFRK-GGCKRGDACEFAHG 94 678******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-6 | 68 | 96 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.4E-5 | 68 | 98 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.7E-6 | 69 | 95 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.751 | 70 | 96 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-7 | 71 | 94 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 20 | 104 | 127 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MMMMGAEGGD RRHPTVVPDS AVDVYSSDEF RMYEFKVRRC ARGRSHDWTE CPFVHPGEKA 60 RRRDPRKYHY SSAACPDFRK GGCKRGDACE FAHGVFECWL HPARYRTQPC KDGTTCARRV 120 CFFAHAPDQL RVLSQHQQTT TLPATSTLMS PPVSPPMSPS RTALRRASWP VGTSLNEIVA 180 ALRQLQLTQA NPAPSCWNLQ LGDGLGWADD ADGGLAEGEE PVERVESGRA LRAKIFEKLS 240 KECVVERAEA APPVPAPEVV K |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP096141 | 1e-100 | FP096141.1 Phyllostachys edulis cDNA clone: bphyem209h03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009402941.1 | 1e-146 | PREDICTED: zinc finger CCCH domain-containing protein 35-like | ||||
Swissprot | Q9FU27 | 3e-87 | C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2 | ||||
TrEMBL | M0T350 | 0.0 | M0T350_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P01020_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1578 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29190.1 | 4e-74 | C3H family protein |
Publications ? help Back to Top | |||
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