PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P21050_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 331aa    MW: 35451.8 Da    PI: 10.089
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P21050_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.9e-19161211255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            +y+GVr+++ +g+++AeIrdp  ng  +r++lg+f tae+Aa a+++a+ +++g
  GSMUA_Achr5P21050_001 161 HYRGVRQRP-WGKFAAEIRDPARNG--ARVWLGTFETAEDAALAYDRAAYRMRG 211
                            8********.**********97676..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.7E-32160219IPR001471AP2/ERF domain
CDDcd000181.32E-29160219No hitNo description
SuperFamilySSF541713.27E-23161221IPR016177DNA-binding domain
SMARTSM003801.1E-37161225IPR001471AP2/ERF domain
PROSITE profilePS5103224.236161219IPR001471AP2/ERF domain
PfamPF008471.9E-13161211IPR001471AP2/ERF domain
PRINTSPR003677.4E-11162173IPR001471AP2/ERF domain
PRINTSPR003677.4E-11185201IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGFLPRDKIG NLQGSTRPLS SLYSLRTFLF LSFTSQPAKI HRSPLILTTG QRKHIMDQSQ  60
ELALLEAARH HLLMDADEPR PDPNGPSVVT AYRRSSSFGR FVADGWSDGL PFRLDDSDDM  120
VIYGALSDAF HHGWLPSGAK PEPAAEEGEL TPRLPPPAGK HYRGVRQRPW GKFAAEIRDP  180
ARNGARVWLG TFETAEDAAL AYDRAAYRMR GSRALLNFPL RIGSEEAAPA VASPSKRASS  240
EPSSSSSSSS ISSSSYGTSS SSSSSERASP KRRKRGEAEA AAPASSATGP VLGPLPVPVQ  300
AQTGLGFGNR PEIFPAGPVA QLPHVGQLLV S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-39159226370ATERF1
3gcc_A3e-39159226370ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009401653.11e-162PREDICTED: ethylene-responsive transcription factor 2-like
SwissprotQ404794e-57ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLM0T0D40.0M0T0D4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P21050_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38002972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.13e-37ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]