PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P16470_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 455aa    MW: 47007.9 Da    PI: 6.7961
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P16470_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.61.4e-10249294555
                            HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                            h+++Er RR+ri +++  L+el+P+ +      K +Ka +L + ++Y+k Lq
  GSMUA_Achr5P16470_001 249 HSIAERLRRERIAERMKALQELVPNgN------KTDKALMLDEIIDYVKFLQ 294
                            99***********************55......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-15242300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.882244293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-15246299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.76E-12248298No hitNo description
PfamPF000107.0E-8249294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-13250299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MQRSGKDVQG MAAPHVALQE LQNGGGGAGR DDFFDQMISG LAPAWPPGLG DPKLLFGAGV  60
GGKAPEVASA AEGVRYVPYD ESSLLASRLR QQEASRGGGS LTETSMLLQL GQHSHHQAQQ  120
QLLLQSIAQP PAAGGGDSRG FLPLPLSLGS GGSGDSGLLV DRSRDEVDAP FKSPHLTEAE  180
GLYSNGFGGS LQRAIQAPTQ QQLLHHPQNY GMGQGTRTGT AAASAPACGV TAPPRPRVRA  240
RRGQATDPHS IAERLRRERI AERMKALQEL VPNGNKTDKA LMLDEIIDYV KFLQLQVKAK  300
TSLPPYNASK VLSMSRLGGA AAVAPLVADM SSEVFNGAAV DGVVGGDDGS MTVAEHQVAK  360
LMEEDMGSAM QYLQGKGLCL IPISLVSAIS SAAACHPRPP GSGCLGQLNR PTHHAAGDAP  420
ASPTISALTV QSTNGSGTEA DAPWPAGSKD GAAIP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253258RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009401065.10.0PREDICTED: transcription factor UNE12-like
RefseqXP_018681293.10.0PREDICTED: transcription factor UNE12-like
TrEMBLM0SZ260.0M0SZ26_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P16470_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.13e-38LJRHL1-like 1