PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P04670_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | AP2 | ||||||||
Protein Properties | Length: 360aa MW: 40886.6 Da PI: 7.9741 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.2 | 4e-13 | 43 | 100 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkklege 56 s ++GV++++++gr++A+++d ++n ++k+ g+++ +e Aa a++ a++k++g+ GSMUA_Achr5P04670_001 43 SVFRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGKQGSYDDEEAAAHAYDLAALKYWGH 100 689******************99998887755555********************997 PP | |||||||
2 | AP2 | 51.7 | 2.2e-16 | 142 | 193 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I +s +k+ +lg++ t eeAa a++ a+ +++g GSMUA_Achr5P04670_001 142 SKYRGVARHHHNGRWEARIGRVSG---NKYLYLGTYATQEEAATAYDIAAIEYRG 193 89****99**********999754...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.85E-15 | 43 | 109 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.4E-8 | 43 | 100 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-19 | 44 | 113 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-13 | 44 | 109 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.386 | 44 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-5 | 45 | 56 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.33E-24 | 142 | 203 | No hit | No description |
Pfam | PF00847 | 1.5E-11 | 142 | 193 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-17 | 142 | 203 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.3E-26 | 143 | 207 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-18 | 143 | 202 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.439 | 143 | 201 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-5 | 183 | 203 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0040008 | Biological Process | regulation of growth | ||||
GO:0045723 | Biological Process | positive regulation of fatty acid biosynthetic process | ||||
GO:1901959 | Biological Process | positive regulation of cutin biosynthetic process | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MGKIQKNNSG NQKNVDKNDS SSSMKMKRTR RSVPRDSPSQ RSSVFRGVTR HRWTGRYEAH 60 LWDKNCWNES QNKKGKQGSY DDEEAAAHAY DLAALKYWGH DTILNFPTSA YQEELKDMEN 120 QSREEYIGSL RRKSSGFSRG VSKYRGVARH HHNGRWEARI GRVSGNKYLY LGTYATQEEA 180 ATAYDIAAIE YRGLNAVTNF DLSRYIKWLQ PKGLDAEPGS HGGAAQSMQQ QDGISMLEKT 240 SAESSSTSST PGCDDKPTGC SFPDYIQTYF ECQDNGGFIE EEDSIFGDLS TLISPITDLK 300 GGKLRQKVDY TEEQNIDSGR RQLFFFLSFF FLPKEMIKLI IDSFLFPSMW IVIVLPLPTQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009399575.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X2 | ||||
Swissprot | Q94AN4 | 1e-105 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | M0SVP6 | 0.0 | M0SVP6_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P04670_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3319 | 36 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79700.2 | 3e-90 | AP2 family protein |
Publications ? help Back to Top | |||
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