PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P01720_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | C2H2 | ||||||||
Protein Properties | Length: 228aa MW: 24204.2 Da PI: 7.8941 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.9 | 0.0014 | 85 | 107 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F + L H ++H GSMUA_Achr5P01720_001 85 HRCSVCGKAFGSYQALGGHKSSH 107 79********9999999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.44E-8 | 85 | 157 | No hit | No description |
PROSITE profile | PS50157 | 10.138 | 85 | 112 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 9.3E-13 | 85 | 109 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.045 | 85 | 107 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 87 | 107 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 5.5E-14 | 134 | 159 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.974 | 135 | 157 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.31 | 135 | 157 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 137 | 157 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MAVQTLETTV STAIPLLSDE TSDEELPHIV GWAKRKRSKR FFDHPTTEEE YLALCLVMLA 60 RGGGSGTHRL PALASDSAPP AKLEHRCSVC GKAFGSYQAL GGHKSSHRKP SSGVEEASAS 120 GSSTASAAFV GARVHRCSVC LKTFPSGQAL GGHKRCHYDG SLASGAAAAM TSSEGASSNH 180 RAFDLNVPAS PDSEFDNVKR WLATMKPEEE EEVQSPLAFK KPRLVIPA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Potential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00118 | ampDAP | Transfer from AT5G67450 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009399109.1 | 1e-167 | PREDICTED: zinc finger protein 1-like | ||||
Swissprot | Q42430 | 1e-45 | ZFP1_WHEAT; Zinc finger protein 1 | ||||
TrEMBL | M0SUV1 | 1e-166 | M0SUV1_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P01720_001 | 1e-167 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1022 | 36 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 2e-41 | salt tolerance zinc finger |