PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P33280_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 679aa    MW: 74580.1 Da    PI: 7.6937
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P33280_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.9e-07102121525
                            --SGGGGTS--TTTTT-SS-S CS
                zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                            +C+ffar G+C  G++C+F H
  GSMUA_Achr4P33280_001 102 ICNFFAR-GWCIKGNSCRFLH 121
                            8******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.45597124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-697122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-4102124IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-5102121IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MIDHSSSFPF FHVDISKKHE DHCKELKSVS SSPARSYINS SNSHVKDVRG GNLDNNPLSE  60
SYITKASEIS DGGASQETPQ RRPRSLSPST ELEGVNKKPA VICNFFARGW CIKGNSCRFL  120
HKKEGAGCTS QVAKEDRTTS GDPVDCKGSP EKFEISSKSA SIDSIGLSIV ENSRKSDVSP  180
SALVRTYGGE IHGSSQMRDD NNLLASNTYP KECFQGNVPL TDRTSHLAVD GLRQKTLFQE  240
GDQRTYGLKH NLDSIGDGRS SSGEFLSRDY SGEGKIYKEV PGGESLSDGS FSRASSFTKN  300
PLTSRYDYVC GRSFTTTDVY RGCNNTYSYE KIPDSFAIRY QQSHFPPYDS YNSCLTSSVS  360
SSFKNSLHLF CGSPSIESVH PYAQARTRLA HGSPPLDAKQ QDICRTLDYG RGVGATTSGQ  420
QSIAGDILTF SDQKSELQEN TWEPSIPFRS SFCSARAFKS SSEIQYDPLV DSIEPPKVGL  480
LASASPRGFT TSMTSQHIVG YPILGDIAPE YNVKKSFNTS TPAYESMLDN KKSQHEICGY  540
TNVMAPAPVA VDGGDNITPK GESQVHHLTD VAYVDKTDLV CNMSKVDEGK EIKESKAVKN  600
FRTALVDFLK ELLKPVWKEG HLSKDAHKMI VKKASEKVLS ALQPHQIPSD TESINHYLSI  660
SKPKLLKLVE GYVNKYSKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009397197.10.0PREDICTED: zinc finger CCCH domain-containing protein 36
RefseqXP_009397198.10.0PREDICTED: zinc finger CCCH domain-containing protein 36
RefseqXP_009397199.10.0PREDICTED: zinc finger CCCH domain-containing protein 36
RefseqXP_018681091.10.0PREDICTED: zinc finger CCCH domain-containing protein 36
RefseqXP_018681092.10.0PREDICTED: zinc finger CCCH domain-containing protein 36
RefseqXP_018681093.10.0PREDICTED: zinc finger CCCH domain-containing protein 36
RefseqXP_018681094.10.0PREDICTED: zinc finger CCCH domain-containing protein 36
RefseqXP_018681095.10.0PREDICTED: zinc finger CCCH domain-containing protein 36
RefseqXP_018681096.10.0PREDICTED: zinc finger CCCH domain-containing protein 36
TrEMBLM0SU900.0M0SU90_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P33280_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110102123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-29C3H family protein