PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P14580_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 332aa    MW: 36801.2 Da    PI: 6.0476
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P14580_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.6e-13168214455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             h ++Er+RR+r+N  f  L +++P +     kK +Ka+ L  Av+YI++L+
  GSMUA_Achr4P14580_001 168 DHVIAERKRRERLNLQFIALSTIIPGL-----KKTDKATLLGDAVNYIRQLE 214
                            6999***********************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.351164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-16168227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10168214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.68E-12169218No hitNo description
SuperFamilySSF474594.06E-16169233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-14170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEQSSGQWPP PEEENSDLSF IYQPEMNSLD MFTANQIMES LGEELHHHHL PSGSCFPFDS  60
AGSSEFNNNA SGSLVGIPYG TRMTTAVTNE LVSVEAPQAS PNFLSFGNQD SLHDPPQLYM  120
NSGKGVVEPQ NEITSLFSHG STWSEDTLEF QRQEKKSMGS RPPSSAQDHV IAERKRRERL  180
NLQFIALSTI IPGLKKTDKA TLLGDAVNYI RQLEEKVKTL EEKASERTVE STILVKKTHI  240
PTGDHTSDAE GSPFSEAFPK ITASLNGNSI LVRVQCEKRK GLFVKVLSEI ERHHLSVINT  300
NVMPFASSSL NITVTAQASR YHFLLHSCKL QS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172177ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018681044.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLM0SNX30.0M0SNX3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P14580_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.12e-45bHLH family protein