PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P20390_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ZF-HD | ||||||||
Protein Properties | Length: 207aa MW: 22298.8 Da PI: 6.6211 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 100.9 | 8.8e-32 | 43 | 96 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +vrY+eClkNhA+ +GghavDGC+Efm++ geegt +al CaACgCHRnFHR+++ GSMUA_Achr3P20390_001 43 GVRYRECLKNHAVGIGGHAVDGCREFMAA-GEEGTLDALSCAACGCHRNFHRKDS 96 68**************************9.999********************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.4E-29 | 44 | 95 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 4.0E-21 | 45 | 95 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.3E-27 | 45 | 95 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.032 | 46 | 95 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.9E-16 | 137 | 199 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-28 | 143 | 200 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.3E-24 | 144 | 197 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MDFDDHDEGD EEIGLPVGSS YDTVMENLGS GHRKAHGGGS GGGVRYRECL KNHAVGIGGH 60 AVDGCREFMA AGEEGTLDAL SCAACGCHRN FHRKDSGGSG AGGGAAGGGG AMEVTGYHPQ 120 PSPLALPSTS GVGGHSREDH DDVFRTKFTQ EQKEKMLAFA ERLGWRIQKH DEAAVQQFCE 180 ETCIKRHVLK VWMHNNKHTL ALLWRRM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-27 | 144 | 199 | 20 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU963277 | 1e-53 | EU963277.1 Zea mays clone 260287 ZF-HD protein dimerisation region containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009393645.1 | 1e-118 | PREDICTED: zinc-finger homeodomain protein 2-like isoform X3 | ||||
Swissprot | A2Z259 | 1e-66 | ZHD1_ORYSI; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | M0SGA5 | 1e-151 | M0SGA5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P20390_001 | 1e-152 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3950 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 2e-60 | homeobox protein 22 |