PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P13010_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ERF | ||||||||
Protein Properties | Length: 153aa MW: 16474.4 Da PI: 6.9209 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.1 | 6e-20 | 21 | 71 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr ++ +gr++AeIrdp++ ++r++lg+f++ae+Aa+a++aa+ +l+g GSMUA_Achr3P13010_001 21 TRFRGVRKRP-WGRFAAEIRDPCK---KTRVWLGTFDSAEDAARAYDAAAVALRG 71 589*******.**********854...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.9E-13 | 21 | 71 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.94E-19 | 21 | 79 | No hit | No description |
PROSITE profile | PS51032 | 23.42 | 22 | 79 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-32 | 22 | 80 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-38 | 22 | 85 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.32E-22 | 22 | 79 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.6E-10 | 23 | 34 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-10 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MRKGRAEAAH PPAEVGGAAG TRFRGVRKRP WGRFAAEIRD PCKKTRVWLG TFDSAEDAAR 60 AYDAAAVALR GTKAKTNFPS LPSHSSTVEK QINPPPPPRV LNGDDDCHSD CGSSSSVVDD 120 DGDIVSLCRQ PLAFDLNLLP PSEDDLHDTA LRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-22 | 18 | 79 | 1 | 63 | ATERF1 |
3gcc_A | 1e-22 | 18 | 79 | 1 | 63 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009392111.1 | 1e-80 | PREDICTED: ethylene-responsive transcription factor 3-like | ||||
Swissprot | Q9LDE4 | 5e-30 | ERF83_ARATH; Ethylene-responsive transcription factor 7 | ||||
TrEMBL | M0SE68 | 1e-107 | M0SE68_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P13010_001 | 1e-108 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5123 | 27 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20310.1 | 1e-22 | ethylene response factor 7 |
Publications ? help Back to Top | |||
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