PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P05070_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | AP2 | ||||||||
Protein Properties | Length: 455aa MW: 49385.1 Da PI: 6.0972 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.3 | 3.4e-12 | 124 | 184 | 1 | 55 |
AP2 1 sgykGV.rwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV ++++++gr++A+++d + g ++ ++++lg ++e+Aa+a++ a++k++g GSMUA_Achr3P05070_001 124 SIYRGVtSRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGASLFEEKAARAYDLAALKYWG 184 57*****9**************666664477446*************************98 PP | |||||||
2 | AP2 | 47.5 | 4.5e-15 | 227 | 278 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g GSMUA_Achr3P05070_001 227 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 278 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.8E-9 | 124 | 184 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-12 | 124 | 194 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.13E-16 | 124 | 194 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.2E-13 | 125 | 193 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.886 | 125 | 192 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-21 | 125 | 198 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.6E-10 | 227 | 278 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.45E-23 | 227 | 288 | No hit | No description |
SuperFamily | SSF54171 | 5.95E-18 | 227 | 288 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.045 | 228 | 286 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-18 | 228 | 287 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-33 | 228 | 292 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 455 aa Download sequence Send to blast |
MDMDASDSWL AFSHSQQPYF LQAFSSYHRG VEGADEETNA ATELVALAGM GPKLEDFLGG 60 PLGRYSGGDD APGAEGVYDS DLKTIAAGFL RGHPAEQQEL QAAKEAAPPA ESRKAAETFG 120 QRTSIYRGVT SRHRWTGRYE AHLWDNSCRR EGQSRKGRQV YLGASLFEEK AARAYDLAAL 180 KYWGPTTTTN FPISNYEKEL EEMKNMTRQE FVASLRRKSS GFSRGASIYR GVTRHHQHGR 240 WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGLN AVTNFDMSRY DVNSIVNSNL 300 PIGGLSAGSS KASESSPSSS SDAMSIDQDR DYWSLLALHH HQQQQQSSQA SGFSLFSSGS 360 TMDFATAASN KVMSQETGGG GGGVAWNNGM LEQQHEQSQG STCTSIPYAT YVACGGGYGY 420 EGATASGWVA PPSSYYQQTS NPNVAAFQTA IFGME |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009390507.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL5 | ||||
Swissprot | Q6PQQ3 | 1e-134 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | M0SBX5 | 0.0 | M0SBX5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P05070_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP797 | 38 | 151 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-124 | AINTEGUMENTA-like 5 |
Publications ? help Back to Top | |||
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