PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P04630_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 488aa    MW: 49441.2 Da    PI: 6.5108
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P04630_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.6e-12281326555
                            HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  GSMUA_Achr3P04630_001 281 HSIAERLRRERIADRMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 326
                            99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.09E-13274330No hitNo description
SuperFamilySSF474594.97E-16274333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.352276325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-16278332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-9281326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-14282331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MQPSSREMQG MAGSMNGGIS HSVAVAQIAL RELQNGHGGR QIPNSGPQAS FDDGASGHDD  60
FLDQMLSSLP SSWAELGNLK NPWDPPEAGQ RIFGAGLAGE TSPEEPSAAA AEGMRYPPYD  120
ESSLLANRLR QHQISGGSSP NGKAMMVHLD HQSQQQMLLP SLGRSPVASG DSGLLSLPLT  180
LGTGGYDVDA PFKSLNPTGG EGLFNGLGGP LHRAQSAFGH PQHQGGASMP SQNFTAAAAT  240
GGVGQAASAS ASASASASAG GGTGPPRQKV RARRGQATDP HSIAERLRRE RIADRMKALQ  300
ELVPNANKTD KASMLDEIID YVKFLQLQVK ASSPSLVLSM SRLGGAAAVA PLVADMSSEG  360
QSGAGSGGAN SSGDTLTVTE HQVAKLMEED MGSAMQYLQG KGLCLMPISL ASAISTATAC  420
PPRPLSSSSL SSAGACHLGH GILPGGPHLP SPSGDAPASP GVSALTAQSA MANGAAEAAK  480
EAVTVSKA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1285290RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009390560.10.0PREDICTED: transcription factor bHLH66-like isoform X1
TrEMBLM0SBT10.0M0SBT1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P04630_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.11e-55LJRHL1-like 1