PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P00810_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | SBP | ||||||||
Protein Properties | Length: 255aa MW: 28282.8 Da PI: 9.8469 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 133.6 | 6.5e-42 | 135 | 212 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC++dls ak+yhrrh+vCe+hska+vv+v g +qrfCqqCsrfh l efDe+krsCr+rLa+hn+rrrk+q+ GSMUA_Achr3P00810_001 135 RCQAEGCRTDLSGAKHYHRRHRVCEFHSKATVVVVGGSQQRFCQQCSRFHGLAEFDEAKRSCRKRLADHNRRRRKPQP 212 6**************************************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 7.0E-35 | 130 | 197 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.633 | 133 | 210 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.5E-40 | 134 | 214 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 9.5E-32 | 136 | 209 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MMNRSSSAEA YFAPSMMSFV GLEGSSLKHQ TWDWETSSID ANTTTTPVTT SNLQSHPFFP 60 NVPLLDCTPP PLLPMTNSFP FYSAPPLPEY PVGLIKREDG VGGRIGLNLG RRTYFSSGES 120 LTTRGVYSLS HQPPRCQAEG CRTDLSGAKH YHRRHRVCEF HSKATVVVVG GSQQRFCQQC 180 SRFHGLAEFD EAKRSCRKRL ADHNRRRRKP QPPATMAEPS APNNANASSR GQKTTRDSSN 240 LGAPIPLFYQ QPLNA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-29 | 136 | 209 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 192 | 209 | KRSCRKRLADHNRRRRKP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018678966.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 10 isoform X1 | ||||
TrEMBL | M0SAP9 | 0.0 | M0SAP9_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P00810_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2375 | 35 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 6e-47 | squamosa promoter binding protein-like 8 |