PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P00120_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | B3 | ||||||||
Protein Properties | Length: 181aa MW: 20683.6 Da PI: 8.2277 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.1 | 1.4e-17 | 4 | 95 | 2 | 90 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 +k+lt+sdv++ gr+vlpk+ ae++ ++++e++ l + d + +W++k+++ ++ks++y+l+ ++ +Fv+a+ L++gDf+ +++ GSMUA_Achr3P00120_001 4 CKELTNSDVSNIGRIVLPKREAEAYlpPLSEREGILLDMDDmTLAVTWKFKFRFwpNNKSRMYILE-NTAGFVRAHCLQAGDFLFIYR-- 90 799************************889999999**9996677*******99777888888888.*****************9994.. PP S.SEE CS B3 87 r.sef 90 + +++ GSMUA_Achr3P00120_001 91 NpTSG 95 43444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.8E-26 | 2 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.62E-20 | 2 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.40E-24 | 2 | 100 | No hit | No description |
SMART | SM01019 | 1.0E-12 | 3 | 102 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.8E-14 | 4 | 95 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MILCKELTNS DVSNIGRIVL PKREAEAYLP PLSEREGILL DMDDMTLAVT WKFKFRFWPN 60 NKSRMYILEN TAGFVRAHCL QAGDFLFIYR NPTSGNHIVR GNKGMPQRSP LDSLQYSSRN 120 QFIVNEDCCS STLHVKKARS DRRHSPINPN KIIGHGSSSL TMTELNDLEG DITCHPHYFP 180 E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 4e-34 | 1 | 115 | 3 | 116 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 4e-34 | 1 | 115 | 3 | 116 | B3 domain-containing transcription factor FUS3 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026664310.1 | 8e-54 | B3 domain-containing protein Os04g0676600-like | ||||
Swissprot | Q7XKC4 | 3e-44 | Y4765_ORYSJ; Putative B3 domain-containing protein Os04g0676650 | ||||
TrEMBL | M0SAI0 | 1e-134 | M0SAI0_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P00120_001 | 1e-135 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11817 | 28 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 4e-34 | B3 family protein |