PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr2P16610_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | C3H | ||||||||
Protein Properties | Length: 338aa MW: 36715.3 Da PI: 7.6464 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.5 | 5.6e-09 | 141 | 162 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C++f++ G Ck+Gd C FaHg GSMUA_Achr2P16610_001 141 AACPDFRK-GGCKRGDACEFAHG 162 78******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.7E-5 | 137 | 163 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.178 | 138 | 164 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.7E-7 | 141 | 162 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-5 | 142 | 164 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 12 | 172 | 195 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.258 | 172 | 196 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MMMMMTTTTG GDGGQLRYPT VHVPPWSLPF ENMAAGTDYH LTAASGGGGV GGQEFPFEES 60 TFTALQRQLS CKGEETGAEE EDVEEPASAV DVYSSDEFRM YEFKVRRCAR GRSHDWTECP 120 FAHPGEKARR RDPRKYHYSG AACPDFRKGG CKRGDACEFA HGVFECWLHP ARYRTQPCKD 180 GTACRRRVCF FAHTPDQLRH LMSSSPTSTL MSPPISSPSN SPPMSPSTAA LGRASWSVGT 240 SPNEIVASMR QLQLSKAKSA PSSWGFQLGS TLFGSPRGTG TGGGSAEGEE PVERVESGRA 300 LRAKIFEKLS KECCVAKRAE AAPPMPAPDV GWVSELVK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC132486 | 1e-100 | AC132486.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0473H02, complete sequence. | |||
GenBank | AK106392 | 1e-100 | AK106392.1 Oryza sativa Japonica Group cDNA clone:002-102-F01, full insert sequence. | |||
GenBank | AP014961 | 1e-100 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 1e-100 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009388582.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 2-like | ||||
Swissprot | O82199 | 2e-99 | C3H20_ARATH; Zinc finger CCCH domain-containing protein 20 | ||||
TrEMBL | M0S8K2 | 0.0 | M0S8K2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr2P16610_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1578 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29190.1 | 1e-83 | C3H family protein |
Publications ? help Back to Top | |||
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