PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr2P12850_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | YABBY | ||||||||
Protein Properties | Length: 208aa MW: 23014.6 Da PI: 8.882 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 217.9 | 3e-67 | 2 | 178 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee................lle 73 + + +e++Cyv+CnfCnt+lavsvP +sl+++vtvrCGhC++llsvn+ q+l+ +s l+++ +e+ + GSMUA_Achr2P12850_001 2 SAQVLPEHICYVHCNFCNTVLAVSVPGNSLLNIVTVRCGHCSNLLSVNMGALLQALPFQS-LQHARRESklpmsinyivfllvkaIIF 88 567889***************************************************999.788888778999****99986554444 PP YABBY 74 elkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWa 161 + ++++ ++ +++++ts ++++++++ +p ++PPekr r+Psaynrfikeeiqrika+nPdishreafs+aaknWa GSMUA_Achr2P12850_001 89 DICSQGNGVECGSP-SKCKRTSLLC-TMPKDQEQTLP-----MHPPEKRHRAPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWA 169 44444444444333.3333333333.46888888888.....69******************************************** PP YABBY 162 hfPkihfgl 170 hfP+ihfgl GSMUA_Achr2P12850_001 170 HFPRIHFGL 178 *******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.7E-70 | 7 | 178 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 8.9E-9 | 115 | 171 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 9.4E-6 | 125 | 172 | IPR009071 | High mobility group box domain |
CDD | cd01390 | 6.70E-6 | 132 | 168 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MSAQVLPEHI CYVHCNFCNT VLAVSVPGNS LLNIVTVRCG HCSNLLSVNM GALLQALPFQ 60 SLQHARRESK LPMSINYIVF LLVKAIIFDI CSQGNGVECG SPSKCKRTSL LCTMPKDQEQ 120 TLPMHPPEKR HRAPSAYNRF IKEEIQRIKA NNPDISHREA FSTAAKNWAH FPRIHFGLNI 180 DGNKQAKLDE PVSAPANTPG GQKGHSFC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT795276 | 2e-55 | KT795276.1 Strelitzia sp. KM-2016 isolate 116 YABBY2 (YABBY2) mRNA, partial cds. | |||
GenBank | KT795277 | 2e-55 | KT795277.1 Strelitzia sp. KM-2016 isolate 117 YABBY2 (YABBY2) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009389764.1 | 1e-129 | PREDICTED: protein YABBY 2-like | ||||
Swissprot | Q10FZ7 | 5e-68 | YAB2_ORYSJ; Protein YABBY 2 | ||||
TrEMBL | M0S7H6 | 1e-154 | M0S7H6_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr2P12850_001 | 1e-154 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1394 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 1e-59 | YABBY family protein |