PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr2P11940_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | SBP | ||||||||
Protein Properties | Length: 318aa MW: 34276.4 Da PI: 8.2916 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.3 | 1.4e-40 | 121 | 197 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cq+egC dl++ak+yhrrhkvCe+hska+ ++v+gl+qrfCqqCsrfh+l+efD++krsCr+rLa+hn+rrrk+q GSMUA_Achr2P11940_001 121 RCQAEGCGIDLTHAKHYHRRHKVCEFHSKASIAIVAGLSQRFCQQCSRFHALTEFDQGKRSCRKRLADHNRRRRKSQ 197 6**************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.8E-31 | 117 | 183 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.889 | 119 | 196 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.66E-38 | 120 | 197 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.7E-30 | 122 | 195 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MMLDYEWGNP AAAAAAMLLF GEENGGHDGG QQHATLFDHF GGHGLGGSGF ADFFPQPQPL 60 TAAALFPPSP PSTCHQRYGM ALPPLPARIG LNLGVRTYFS PAEEASVVVG RVCRRRTRIA 120 RCQAEGCGID LTHAKHYHRR HKVCEFHSKA SIAIVAGLSQ RFCQQCSRFH ALTEFDQGKR 180 SCRKRLADHN RRRRKSQDLA TSTVNQHNNN SSSDASADAK APTSFTGCKP ESDSPVAHMS 240 PPQAQPLLPM PLTHTATTRT GLGLGCGSGV AGTGMALSSS AENSPPGAPF LVQLGEFRVR 300 EERFTAWGDE EEDRSSIN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-29 | 122 | 195 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009389111.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 8 | ||||
TrEMBL | M0S785 | 0.0 | M0S785_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr2P11940_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19463 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 6e-48 | squamosa promoter binding protein-like 8 |