PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr2P10250_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 242aa MW: 27790.8 Da PI: 9.4307 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 100.2 | 8e-32 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ GSMUA_Achr2P10250_001 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 58 79**********************************************95 PP | |||||||
2 | K-box | 109.2 | 4.7e-36 | 76 | 172 | 3 | 99 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 +++ + ++ +a++++qe++kLk++ e+Lqr+qRhllGedL++Ls+keLqqLe+qLe++l++ R++K++l+leq+eel+kke+ l e+ GSMUA_Achr2P10250_001 76 SQDPNVVNRDNAQNWCQEMSKLKAKFESLQRSQRHLLGEDLGPLSVKELQQLERQLESALSQARQRKSQLILEQMEELRKKERHLGEI 163 44555589999***************************************************************************** PP K-box 91 nkaLrkkle 99 nk+Lr ++e GSMUA_Achr2P10250_001 164 NKQLRDQIE 172 ******986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.1E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.445 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.72E-46 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 2.62E-34 | 2 | 87 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.8E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.8E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.8E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.1E-31 | 84 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 17.512 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSV 60 GMSKTLERYQ HWCYASQDPN VVNRDNAQNW CQEMSKLKAK FESLQRSQRH LLGEDLGPLS 120 VKELQQLERQ LESALSQARQ RKSQLILEQM EELRKKERHL GEINKQLRDQ IEVEGATLKA 180 FQGSWCSDAM IGSNAFAAQP SHSAGMDREP MLRIGYHQFV PADAAIPRNP IGENNFMLEW 240 VP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 2e-23 | 74 | 168 | 1 | 98 | Developmental protein SEPALLATA 3 |
4ox0_B | 2e-23 | 74 | 168 | 1 | 98 | Developmental protein SEPALLATA 3 |
4ox0_C | 2e-23 | 74 | 168 | 1 | 98 | Developmental protein SEPALLATA 3 |
4ox0_D | 2e-23 | 74 | 168 | 1 | 98 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Regulates floral organ identity and floral meristem determinacy. May be involved in the control of flowering time. {ECO:0000269|PubMed:19820190, ECO:0000269|Ref.8}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU869308 | 0.0 | EU869308.1 Musa acuminata AAA Group MADS-box protein MADS3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009389276.1 | 0.0 | PREDICTED: MADS-box transcription factor 6 | ||||
Swissprot | Q6EU39 | 1e-119 | MADS6_ORYSJ; MADS-box transcription factor 6 | ||||
TrEMBL | D4HM41 | 1e-179 | D4HM41_MUSAC; MADS-box protein MADS3 | ||||
TrEMBL | M0S6R6 | 1e-179 | M0S6R6_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr2P10250_001 | 1e-180 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4187 | 35 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 6e-99 | AGAMOUS-like 6 |