PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P04350_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MIKC_MADS
Protein Properties Length: 240aa    MW: 27854.6 Da    PI: 8.206
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P04350_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.23.3e-31959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           krienk+nrqvtfskRrng+lKKA+ELSvLCdae+a+iifss+gkl+e++s
  GSMUA_Achr2P04350_001  9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEIALIIFSSRGKLFEFAS 59
                           79***********************************************86 PP
2K-box98.97.2e-3380172799
                  K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                             + +e++a + +qe++kLk+++e+Lqr++R+llGedL++LslkeLqqLe+qLe++l++ R+++++l+l+++eelqk+e+ l+++n++L
  GSMUA_Achr2P04350_001  80 ADDQETQARNTYQEISKLKAKYESLQRSHRNLLGEDLGPLSLKELQQLERQLESALSQARQRRTQLMLDHMEELQKRERHLEDINRQL 167
                            45789999******************************************************************************** PP

                  K-box  95 rkkle 99 
                            + kle
  GSMUA_Achr2P04350_001 168 KFKLE 172
                            99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.3E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.543161IPR002100Transcription factor, MADS-box
CDDcd002654.09E-46277No hitNo description
SuperFamilySSF554551.83E-33278IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.8E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-333859IPR002100Transcription factor, MADS-box
PfamPF014869.1E-2882171IPR002487Transcription factor, K-box
PROSITE profilePS5129716.29387177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEIALIIFSS RGKLFEFASS  60
EITKTIERYQ SYQYASQLPA DDQETQARNT YQEISKLKAK YESLQRSHRN LLGEDLGPLS  120
LKELQQLERQ LESALSQARQ RRTQLMLDHM EELQKRERHL EDINRQLKFK LEAETSSLRA  180
VQGSWEPNAM IESDPFSFRL QPNTMECEPT LQMYHHFVPP EAATPGNTGG ENTYMLGWGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-24188190MEF2 CHIMERA
6byy_B3e-24188190MEF2 CHIMERA
6byy_C3e-24188190MEF2 CHIMERA
6byy_D3e-24188190MEF2 CHIMERA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128141RQLESALSQARQRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009384304.11e-179PREDICTED: MADS-box transcription factor 6-like
SwissprotQ8LLR11e-104MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLM0S5261e-177M0S526_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P04350_0011e-178(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41873566
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.13e-77AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]