PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P24150_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 266aa    MW: 29916.4 Da    PI: 8.4946
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P24150_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00081426123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C+ C+++Fs+   L  H+r+H
  GSMUA_Achr1P24150_001  4 HRCKLCHRRFSNGRALGGHMRSH 26
                           79********************9 PP
2zf-C2H214.20.00013175197123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++Cp+C ++F++   L  H r+H
  GSMUA_Achr1P24150_001 175 FECPYCYRVFPSGQALGGHKRSH 197
                            89******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.6E-7326IPR007087Zinc finger, C2H2
SuperFamilySSF576671.81E-8326No hitNo description
SMARTSM003550.027426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.094431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576671.81E-8170197No hitNo description
PfamPF139129.4E-14175198IPR007087Zinc finger, C2H2
SMARTSM003550.11175197IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.577175197IPR007087Zinc finger, C2H2
PROSITE patternPS000280177197IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MERHRCKLCH RRFSNGRALG GHMRSHVAHV PRPTRAQQPL PSPCASSSFF PAEEAKDPEA  60
AASYGPRENL RRSLSLVDHK FAFSSSFRRR FSRNRRREDP SADAEPVSSI SDASPEEDVA  120
RWLMLLSRNA WSKSEEEEDE EAKQPTATAR SWRKRTRYHD DPSDANAADR NPKLFECPYC  180
YRVFPSGQAL GGHKRSHRLS TAAIAAAIPA RPLLPVKDCF IDLNLPAPLE EEAELSALSV  240
ATEFASNNES PLSCVIMNYT VRNQKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009415446.11e-134PREDICTED: zinc finger protein ZAT1-like
TrEMBLM0S2M20.0M0S2M2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P24150_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.11e-19C2H2-like zinc finger protein