PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr1P24060_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 244aa MW: 28119 Da PI: 8.8201 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 96.1 | 1.6e-30 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRr g+lKKA+ELSvLCdaeva+iifss+gkl+e+ GSMUA_Achr1P24060_001 9 KRIENKINRQVTFSKRRSGLLKKAYELSVLCDAEVALIIFSSRGKLFEFG 58 79**********************************************95 PP | |||||||
2 | K-box | 94.4 | 1.9e-31 | 78 | 173 | 4 | 99 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 ++++ +e++++s++qe+ kLk ++e+Lqr++RhllGedL++L +keLqqLe+qL+ +l++ R++K +l++eqieelqk e+ l+e n GSMUA_Achr1P24060_001 78 ETNVDYHETETQSWYQEFFKLKVKYESLQRSHRHLLGEDLGTLGVKELQQLEKQLDLALSQSRQTKLKLMMEQIEELQKNERHLEEVN 165 4455599********************************************************************************* PP K-box 92 kaLrkkle 99 ++L+ kl+ GSMUA_Achr1P24060_001 166 RKLKDKLQ 173 ****9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.828 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.5E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-33 | 2 | 86 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.96E-43 | 2 | 77 | No hit | No description |
PRINTS | PR00404 | 3.1E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.1E-26 | 84 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.114 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FSKRRSGLLK KAYELSVLCD AEVALIIFSS RGKLFEFGSG 60 EVCKTLERYQ SYRYASQETN VDYHETETQS WYQEFFKLKV KYESLQRSHR HLLGEDLGTL 120 GVKELQQLEK QLDLALSQSR QTKLKLMMEQ IEELQKNERH LEEVNRKLKD KLQVEGSSST 180 AIQRCWESKS MAEGNPLPLH PCPANAAYPE PTLQIGYYQH FGRPEAATTT GAAGENNVMV 240 GWLR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-23 | 1 | 86 | 1 | 87 | MEF2 CHIMERA |
6byy_B | 1e-23 | 1 | 86 | 1 | 87 | MEF2 CHIMERA |
6byy_C | 1e-23 | 1 | 86 | 1 | 87 | MEF2 CHIMERA |
6byy_D | 1e-23 | 1 | 86 | 1 | 87 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Regulates floral organ identity and floral meristem determinacy. May be involved in the control of flowering time. {ECO:0000269|PubMed:19820190, ECO:0000269|Ref.8}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC257408 | 2e-65 | KC257408.1 Ananas comosus MADS-box transcription factor (MADS1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009415390.1 | 0.0 | PREDICTED: MADS-box transcription factor 6-like | ||||
Swissprot | Q6EU39 | 1e-101 | MADS6_ORYSJ; MADS-box transcription factor 6 | ||||
TrEMBL | M0S2L3 | 0.0 | M0S2L3_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr1P24060_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4187 | 35 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 2e-76 | AGAMOUS-like 6 |