PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P00750_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MIKC_MADS
Protein Properties Length: 242aa    MW: 27650.5 Da    PI: 9.6054
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P00750_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.21.7e-31958150
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                           krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gk+ye+ 
  GSMUA_Achr1P00750_001  9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKVYEFG 58
                           79**********************************************95 PP
2K-box1095.3e-3676171499
                  K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                            s+++++++++a++++qe+akLk + e+Lqr+qRhllGedL++Ls+keLqqLe+qLe++l++ R++K++l+l+q+eel+kke+ l e+n
  GSMUA_Achr1P00750_001  76 SQDSNVANREAQNWYQEMAKLKTRFESLQRSQRHLLGEDLGPLSVKELQQLERQLESALSQARQRKTQLMLDQMEELRKKERHLGEIN 163
                            56777999******************************************************************************** PP

                  K-box  92 kaLrkkle 99 
                            k+L++++e
  GSMUA_Achr1P00750_001 164 KQLKEQIE 171
                            ******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.249161IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-41160IPR002100Transcription factor, MADS-box
CDDcd002652.22E-45278No hitNo description
SuperFamilySSF554554.19E-34290IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.6E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-323859IPR002100Transcription factor, MADS-box
PfamPF014864.5E-3183170IPR002487Transcription factor, K-box
PROSITE profilePS5129717.86486176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0009911Biological Processpositive regulation of flower development
GO:0010094Biological Processspecification of carpel identity
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048455Biological Processstamen formation
GO:0048459Biological Processfloral whorl structural organization
GO:0048509Biological Processregulation of meristem development
GO:0048833Biological Processspecification of floral organ number
GO:0080060Biological Processintegument development
GO:0080112Biological Processseed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKVYEFGSV  60
GTSKTLERYQ RCCYTSQDSN VANREAQNWY QEMAKLKTRF ESLQRSQRHL LGEDLGPLSV  120
KELQQLERQL ESALSQARQR KTQLMLDQME ELRKKERHLG EINKQLKEQI EAEGATFRAL  180
QGPWCSDATA GGNAFPAQPL QSSGMDREPT LQIGYHQFVP PEVVAMPRNS AGENNFMLGW  240
VP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A4e-2574167198Developmental protein SEPALLATA 3
4ox0_B4e-2574167198Developmental protein SEPALLATA 3
4ox0_C4e-2574167198Developmental protein SEPALLATA 3
4ox0_D4e-2574167198Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00315DAPTransfer from AT2G45650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8153450.0KC815345.1 Heliconia metallica AGL6-like MADS box transcription factor (AGL6) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009392819.10.0PREDICTED: MADS-box transcription factor 6-like
SwissprotQ8LLR11e-125MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLM0RVY31e-179M0RVY3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P00750_0011e-180(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41873566
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.11e-102AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]