PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P00070_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 459aa    MW: 49965.5 Da    PI: 6.7146
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P00070_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.3e-19228278256
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                             y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae Aa a+++ + kl+ge
  GSMUA_Achr1P00070_001 228 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEAAALAYDREAFKLRGE 278
                            59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF067494.5E-2558153IPR009606Protein of unknown function DUF1218
CDDcd000184.03E-32227287No hitNo description
PROSITE profilePS5103223.103228285IPR001471AP2/ERF domain
SMARTSM003801.1E-39228291IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-22228286IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-31228286IPR001471AP2/ERF domain
PRINTSPR003671.6E-10229240IPR001471AP2/ERF domain
PfamPF008473.5E-12229278IPR001471AP2/ERF domain
PRINTSPR003671.6E-10251267IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MASKLVLALV FVFDVIAFAL AVAAEQRRST AKVVTDSENT YNYCVYDSDI ATGYGVGALL  60
FLLLSQAVLM VVSKCFCFGR SLGPGGPRAC ALLFFLLSWL TFVIAEACLL AGSVRNAHHT  120
RYRNMFFDGN LSCETVRKGV FAAGAAFVFF TAILSELYYV TYAKAAGDSI IPSYQERLLK  180
HWSEALNLSP RGNLAMMSHL ARRRSLASLY PGIFQSFMLP PPPAPAKLYR GVRQRHWGKW  240
VAEIRLPKNR TRLWLGTFDT AEAAALAYDR EAFKLRGENA RLNFPNLFLG KGGGGGSRDG  300
ASFSSSSSSA PATPEEAKQH QQDESRQPSQ LESRFNTPPA TAETTVDGGM SSVADSPSGI  360
HEPANLGAMV TTPQPTEMVW GDADEAWFST WGPGSSVWDD VDGANSLLLQ SRLTTIPESD  420
MDYSDPTASA TTKAYQDTDT PASPSSAPPH PPSWFMWKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-20224285163ATERF1
3gcc_A9e-20224285163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009393593.10.0PREDICTED: ethylene-responsive transcription factor ERF053-like
TrEMBLM0RVR50.0M0RVR5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P00070_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.19e-27ERF family protein