PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr11P25190_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bZIP

Protein Properties

Length: 616aa MW: 66628.6 Da PI: 7.0785

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr11P25190_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	40.9	4.6e-13	150	208	4	62
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 kr r+++NRe+A+ sRqRKk++++eLeekvk++ + +L +++ + e a+l+ + GSMUA_Achr11P25190_001 150 EKRRARLMRNRESAQLSRQRKKQYVDELEEKVKSMHSTINELNTKISYIMAENATLRHQ 208 59999*******************************999***9999999988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.6E-15	147	211	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.875	149	209	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.2E-11	150	208	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.44E-12	151	209	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.7E-17	151	209	No hit	No description
CDD	cd14704	1.86E-21	152	203	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042538	Biological Process	hyperosmotic salinity response
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005783	Cellular Component	endoplasmic reticulum
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 616 aa Download sequence Send to blast
MADPPPSSSL LLDPPFADLF PDNLSLPSDD LRDLDLDFDF DDFSVDDFLC SPEEPHHHAS 60 SHPSAADGSA VSSSSSLNQD PPHLAARPCS PESGDSSASG VFTDDDGLSD GHADLNLNNP 120 GSNPRSSKFR RSEEASSPPD VGSGGEVVEE KRRARLMRNR ESAQLSRQRK KQYVDELEEK 180 VKSMHSTINE LNTKISYIMA ENATLRHQLG GSGAPPAVYP PPGAMAPMHF PWVPGYGLRP 240 QGSQVPLVPI PRLKPQQAAP TPKAKKSESK KGERKTKKVA SASLLGLLFF MLILGGAIPR 300 VNRWYEGNEA DEGMSKMKSL SQTKGRIFSP MGSTSWSSPG SEAVFTQNST ENLPAMLYVP 360 RNGKHVKING NLIIHSVLAS EKAMQQAKER QSLGKEGKET GLAVAGNSMS ALAISKPGKE 420 VDQHSRSYRK ASNSDDTYVN NLKATLADDG PMQQWFREGM AGPILSSGMC TEVFQFDVSP 480 SSSSSSIVPT NSIINASSIV NASENLPPTS SHPRKKRNRR IMYPEPIPLR GTTTANNTEQ 540 FEKPSESSNF HNPKPVSSVV VSILADPREA GDGETDGRIS PNSLSRIFVV VLLDSVKYVT 600 YSCVLPFKTS APHLVN

Sequence ? help Back to Top

Protein Sequence Length: 616 aa Download sequence Send to blast

MADPPPSSSL LLDPPFADLF PDNLSLPSDD LRDLDLDFDF DDFSVDDFLC SPEEPHHHAS  60
SHPSAADGSA VSSSSSLNQD PPHLAARPCS PESGDSSASG VFTDDDGLSD GHADLNLNNP  120
GSNPRSSKFR RSEEASSPPD VGSGGEVVEE KRRARLMRNR ESAQLSRQRK KQYVDELEEK  180
VKSMHSTINE LNTKISYIMA ENATLRHQLG GSGAPPAVYP PPGAMAPMHF PWVPGYGLRP  240
QGSQVPLVPI PRLKPQQAAP TPKAKKSESK KGERKTKKVA SASLLGLLFF MLILGGAIPR  300
VNRWYEGNEA DEGMSKMKSL SQTKGRIFSP MGSTSWSSPG SEAVFTQNST ENLPAMLYVP  360
RNGKHVKING NLIIHSVLAS EKAMQQAKER QSLGKEGKET GLAVAGNSMS ALAISKPGKE  420
VDQHSRSYRK ASNSDDTYVN NLKATLADDG PMQQWFREGM AGPILSSGMC TEVFQFDVSP  480
SSSSSSIVPT NSIINASSIV NASENLPPTS SHPRKKRNRR IMYPEPIPLR GTTTANNTEQ  540
FEKPSESSNF HNPKPVSSVV VSILADPREA GDGETDGRIS PNSLSRIFVV VLLDSVKYVT  600
YSCVLPFKTS APHLVN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269\|PubMed:22050533, ECO:0000269\|PubMed:22084314}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000269\|PubMed:22084314}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009384980.1	0.0	PREDICTED: bZIP transcription factor 17-like
Swissprot	Q6AU90	1e-136	BZP39_ORYSJ; bZIP transcription factor 39
TrEMBL	M0RV99	0.0	M0RV99_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr11P25190_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8228	35	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40950.1	5e-99	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response. Plant Cell Physiol., 2012. 53(1): p. 144-53 [PMID:22084314] Ohta M, et al. Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants. J. Exp. Bot., 2013. 64(18): p. 5429-41 [PMID:24153418] Cheng Q, et al. An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice. Plant Biol (Stuttg), 2015. 17(2): p. 419-29 [PMID:25255693]