PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr11P21590_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | GRF | ||||||||
Protein Properties | Length: 205aa MW: 21693.8 Da PI: 9.8357 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 83.6 | 1.6e-26 | 90 | 134 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++epgrCrRtDGKkWRCsr+v++++k+CErH+hrgr+rsrk++e+ GSMUA_Achr11P21590_001 90 EPEPGRCRRTDGKKWRCSRDVVPDQKYCERHMHRGRNRSRKPVEA 134 69****************************************997 PP | |||||||
2 | QLQ | 62.1 | 1.5e-21 | 25 | 60 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT +Qlq+L++Q+l+yKy+aa++PvP +L+++i+k GSMUA_Achr11P21590_001 25 VFTFMQLQELEHQALIYKYMAAGLPVPVHLVLPIWK 60 5**********************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.6E-8 | 24 | 60 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.39 | 25 | 60 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.9E-15 | 26 | 59 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 26.499 | 90 | 134 | IPR014977 | WRC domain |
Pfam | PF08879 | 7.1E-23 | 91 | 133 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 205 aa Download sequence Send to blast |
MAASSSLMLG LGLGLGRGPG AAKPVFTFMQ LQELEHQALI YKYMAAGLPV PVHLVLPIWK 60 SVAASSFGAY VYPSLTGYGS LCLDYRNSME PEPGRCRRTD GKKWRCSRDV VPDQKYCERH 120 MHRGRNRSRK PVEAGAAGGG DTTSTVVPTP QHHSNSSSTQ LSILIPPNGR QLLPTTAGGG 180 GGGGPVSQPE LGILHNGTAC KTATP |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018675903.1 | 1e-150 | PREDICTED: growth-regulating factor 10-like | ||||
Swissprot | Q6AWX7 | 1e-62 | GRF12_ORYSJ; Growth-regulating factor 12 | ||||
TrEMBL | M0RU89 | 1e-148 | M0RU89_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P21590_001 | 1e-149 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6221 | 30 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37740.1 | 1e-39 | growth-regulating factor 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|