PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P20930_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 268aa    MW: 28682.8 Da    PI: 7.7532
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P20930_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-1995145255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             +y+GVr+++ +g+++AeIrdp  ng  +r++lg+f tae+Aa a+++a+ +++g
  GSMUA_Achr11P20930_001  95 HYRGVRQRP-WGKYAAEIRDPARNG--ARVWLGTFETAEDAALAYDRAAYRMRG 145
                             69*******.**********97676..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-1395145IPR001471AP2/ERF domain
PROSITE profilePS5103224.19795153IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-2395155IPR016177DNA-binding domain
SMARTSM003809.9E-3895159IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-3295153IPR001471AP2/ERF domain
CDDcd000189.67E-2995153No hitNo description
PRINTSPR003674.5E-1196107IPR001471AP2/ERF domain
PRINTSPR003674.5E-11119135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MSRAEELALL EAVRHHLLVD VDDSNPDPKV SSSARAYRRS SSFGSLVADL WSDGLPFRLD  60
DSDDMVVYGA LRDAFHHGWL PSGVKPEPPA EEEGHYRGVR QRPWGKYAAE IRDPARNGAR  120
VWLGTFETAE DAALAYDRAA YRMRGSRALL NFPLRIGSEE AAARATSPVP SPSKRASPEP  180
SSSYSSSTSS SSYSSSASYS SSSSSPKRRK RGEATDAAAP TSPSTAPVLC PVPVAVQGQT  240
GLGFSNRPEI FPAGPVAQLP HAGQLLVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-3895160570ATERF1
3gcc_A4e-3895160570ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009384458.11e-168PREDICTED: ethylene-responsive transcription factor 2-like
SwissprotQ404792e-52ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLM0RU230.0M0RU23_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P20930_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38002972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.14e-36ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]