PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P11060_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 1203aa    MW: 132958 Da    PI: 8.2791
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P11060_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.0006110871110122
                              EEET..TTTEEESSHHHHHHHHHH CS
                 zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt 22  
                              y C    C++sFs+k +L  H r 
  GSMUA_Achr11P11060_001 1087 YACDieGCSMSFSTKQDLALHKRD 1110
                              789999***************985 PP
2zf-C2H211.50.0009311121134323
                              ET..TTTEEESSHHHHHHHHHHT CS
                 zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                              Cp   Cgk F ++ +L +H ++H
  GSMUA_Achr11P11060_001 1112 CPvkGCGKKFFSHKYLLQHRKVH 1134
                              9999*****************99 PP
3zf-C2H212.60.000411701196123
                              EEET..TTTEEESSHHHHHHHHHH..T CS
                 zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                              y+C+   Cg++F+  s++ rH r+  H
  GSMUA_Achr11P11060_001 1170 YVCQepGCGQTFRFVSDFSRHKRKtgH 1196
                              99********************99666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005452.6E-153172IPR003349JmjN domain
PROSITE profilePS5118313.6613273IPR003349JmjN domain
PfamPF023751.6E-143366IPR003349JmjN domain
SMARTSM005582.2E-41184357IPR003347JmjC domain
PROSITE profilePS5118432.285184357IPR003347JmjC domain
SuperFamilySSF511979.89E-23198364No hitNo description
PfamPF023731.4E-32217340IPR003347JmjC domain
Gene3DG3DSA:3.30.160.604.2E-410811109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551010871109IPR015880Zinc finger, C2H2-like
SMARTSM003550.6211101134IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.90511101139IPR007087Zinc finger, C2H2
SuperFamilySSF576671.29E-511121146No hitNo description
Gene3DG3DSA:3.30.160.601.4E-411121138IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028011121134IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-811391164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.002611401164IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.03211401169IPR007087Zinc finger, C2H2
PROSITE patternPS00028011421164IPR007087Zinc finger, C2H2
SuperFamilySSF576675.95E-1011501194No hitNo description
Gene3DG3DSA:3.30.160.603.8E-1011651193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.1711701196IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.92811701201IPR007087Zinc finger, C2H2
PROSITE patternPS00028011721196IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1203 aa     Download sequence    Send to blast
MAAAASPSAP GVAAPEPLPL EVPPWLRSLP QAPEFRPTPQ EFQDPIAYIL KIEKEAAAFG  60
ICKIVPPLPP AAKKTAQQIG FCPRRPRPVQ KSVWQSGEHY TLAQFEAKAR QFERSHLRHA  120
AAGGSARKAA ASAALSPIEI ETLFWRASAD KPFSVEYAND MPGSGFAPLP SDGRHCWRDK  180
APANVGESAW NMRGVSRAKG SLLQFMKEEI PGVTSPMVYV AMLFSWFAWH VEDHELHSLN  240
YLHMGAGKTW YGVPRDGRLA FEEVVRIQGY GGEVNPLGKS FTFTILGEKT TVMSPEVLVG  300
EGIPCCSRLV QNAGDFVVTF PGAYHMGFSH GFNCGEAANI ATPEWLRFAK EAAVRRASIN  360
YPPMVSHFQL LYALALSLHT RMPTGDGSEP RSSRLKDKMK GEGEVIVKNA FVQNVIQNNH  420
LLNILLDKGT SCVVLPQNAP DASRLLPSND VGICDKFVGA DQYSFSSDLQ NVEGEKEGSI  480
HGDGLLDQGL LSCVTCGILS FACVAVIQPR ETAAKYLTAA DCGFLNDHAI GSADVSELSR  540
DTNWKPSRNN LVTGIVQIER NVEDRVNDDL VHCDAYSVQV SDWSIKMISD VTCPRAASAL  600
DLLASVYTDS SDFEDEDVPL EKSTCSDKNN MGDSSLVLNT NEHLGNAVET QILHSSEVAH  660
EETKLHLAGS ESQNDLFAQS SQSVDGSDNL NGDDNDDNEG METSKTSIKF MGKSRDVHHK  720
EFDCAVPAEA VTICQELRNV ATKKSPKISV VQGFDKDSSR MHVFCLEHAA EVEKQLQPIG  780
GVHMMILCHP DYPKIESEAK LLAKELGIGN IWKNVKFREA SKEDQERIRV ALEDEEVIPT  840
NSDWTVKLGI NLYYTANLSK SPIYSKQMPY NPVIYKAFGQ KSAGDSPEKP KTSGRRTGRQ  900
KKIVVAGRWC GKVWMTNQVH PCLAHKKETL EQEPTEEYYS SDSDQNPSDE IEIDHSSKVS  960
SKSNSSGSNL AVKSSGKKRK KPSRKAKTKK PRCTMADSKS KATDVSGTSA SPPGRTPRSS  1020
CPRNIESTKQ HKLNSKDEAG GPSSRLRKRP SKSVEQKNKL ANKKQSNKRK AKNNQTANLV  1080
PKDEEEYACD IEGCSMSFST KQDLALHKRD ICPVKGCGKK FFSHKYLLQH RKVHMDDRPL  1140
ECPWKGCKMT FKWPWARTEH IRVHTGDRPY VCQEPGCGQT FRFVSDFSRH KRKTGHSVKK  1200
GRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A4e-77254398406Transcription factor jumonji (Jmj) family protein
6ip4_A4e-77254398406Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1976980KKRKK
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009383339.10.0PREDICTED: lysine-specific demethylase REF6-like
SwissprotQ5N7120.0JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBLM0RR860.0M0RR86_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P11060_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53463246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.10.0relative of early flowering 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]