PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P08770_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 1247aa    MW: 137756 Da    PI: 8.2908
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P08770_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.0003111311154122
                              EEET..TTTEEESSHHHHHHHHHH CS
                 zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt 22  
                              ++C    C++sFs+k +L  H r 
  GSMUA_Achr11P08770_001 1131 FTCDieGCTMSFSTKQDLALHKRD 1154
                              899999***************985 PP
2zf-C2H212.70.0003911561178323
                              ET..TTTEEESSHHHHHHHHHHT CS
                 zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                              Cp   Cgk F ++ +L++H ++H
  GSMUA_Achr11P08770_001 1156 CPvkGCGKKFFSHKYLVQHRKVH 1178
                              9999*****************99 PP
3zf-C2H211.60.0008912141240123
                              EEET..TTTEEESSHHHHHHHHHH..T CS
                 zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                              y+C    Cg++F+  s++ rH r+  H
  GSMUA_Achr11P08770_001 1214 YVCWepGCGQTFRFVSDFSRHKRKtgH 1240
                              899999****************99666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005454.4E-183172IPR003349JmjN domain
PROSITE profilePS5118314.5893273IPR003349JmjN domain
PfamPF023752.0E-153366IPR003349JmjN domain
SMARTSM005582.8E-48188358IPR003347JmjC domain
PROSITE profilePS5118433.752188358IPR003347JmjC domain
SuperFamilySSF511971.1E-24202361No hitNo description
PfamPF023737.6E-35221341IPR003347JmjC domain
Gene3DG3DSA:3.30.160.605.8E-411261153IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551111311153IPR015880Zinc finger, C2H2-like
SMARTSM003550.4911541178IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.96711541183IPR007087Zinc finger, C2H2
SuperFamilySSF576671.1E-511551190No hitNo description
Gene3DG3DSA:3.30.160.608.8E-511561182IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028011561178IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.0E-811831208IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.7211841213IPR007087Zinc finger, C2H2
SMARTSM003550.002611841208IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028011861208IPR007087Zinc finger, C2H2
SuperFamilySSF576676.55E-1011941238No hitNo description
Gene3DG3DSA:3.30.160.606.1E-1012091237IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.74112141245IPR007087Zinc finger, C2H2
SMARTSM003550.8812141240IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012161240IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0040010Biological Processpositive regulation of growth rate
GO:0045815Biological Processpositive regulation of gene expression, epigenetic
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
GO:0071558Molecular Functionhistone demethylase activity (H3-K27 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 1247 aa     Download sequence    Send to blast
MASAASSSAP GVATSDAPPL EVPPWLKSLP LAPEFHPTLQ EFQDPIAYIL KIEKEAAAYG  60
ICKIVPPLPP APKKTAQQIG FCPRRPRPVQ KPVWQSGEHY TLQQFETKAR QFERSHLRRG  120
GGGGGGRKAS SAAATAPTAL SPLEIETLFW RAAADKPFSI EYANDMPGSG FAPMPAAGRR  180
WREEALANVG ESAWNMRGVS RAKGSLLRFM KEEIPGVTSP MVYVAMLFSW FAWHVEDHEL  240
HSLNYLHMGA GKTWYGVPRD AGQAFEEVIR VHGYGGEVNP LVTFALLGEK TTVMSPEVLV  300
GAGIPCCSRL VQNAGDFVVT FPGAYHSGFS HGFNCGEAAN IATPEWLRFA KEAAVRRASI  360
NYPPMVSHFQ LLYALALSLC TRMPISDGSE PRSSRLKDKM KGDGEEMVKN AFVQNVIQNN  420
HLLSVLLDMG ASCVVLPKKA PEIPLCSNSL VRNQVKVKPR LSHGLCNHQE ALEASRIIPS  480
NDAGSCNKYF RADLFSSSSD SQNLEGEKEG TIQGNGLLDQ GLLSCVTCGI LSFACVAVIQ  540
LNEATAKYLM SANCAFLNDH IIGSGEVSGI SGDTNWKTSR NNLITDIVQV SDQSMEIVSD  600
VTCPRGASAL DLLASAYADS SDVEDEDIPH EKFMCFDKNG MNESSEIHDN QIGMSAQSSR  660
VADVSDTLNG HANDVVDNSC QQKSEFSSMN QLEDSKLVSI SDLEDNGVMA TSNASVKFVE  720
EPKDVHVRDL DDDCQNAGTT EIYCSSFKST SVSTEISVNH DFCGNPVVPE KSTAMHPELR  780
NVDPKMTSST GLVMQGSDKD SSRMHVFCLE HAAEVEKQLQ PIGGVHMMLL CHPDYPKIES  840
EAKLLAEELG IGYIWKDVKF REANKQDQER IKVALEDEEV MPMNSDWTVK LGINLYYTAN  900
LSKSPLYSKQ MPYNPIIYKV FGRNSMGNSP VKPKANGRRP GRQRKIVVAG RWCGKVWMSN  960
QVHPYLAHRM ESQEQEHTEE LYSLDIDQKP LIEIDIEHSS KASSKRNSSG SSVATKNSGK  1020
KRKKPSSKAK SKKRRCTMAD ADSKSEDVSG TSASSLGRTL RSNHRRQNVS TSLQKSSLKD  1080
ESGGPSTRLR NRSSKCEEVK KKLAIKKQSR KKKANTPQTA NLALKDEEQE FTCDIEGCTM  1140
SFSTKQDLAL HKRDICPVKG CGKKFFSHKY LVQHRKVHMD DRPLVCPWKG CKMTFKWPWA  1200
RTEHIRVHTG DRPYVCWEPG CGQTFRFVSD FSRHKRKTGH SAKKGRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A7e-71254478413Transcription factor jumonji (Jmj) family protein
6ip4_A7e-71254478413Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118126RGGGGGGGR
210191023KKRKK
310201034KRKKPSSKAKSKKRR
411001112KKLAIKKQSRKKK
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009382914.10.0PREDICTED: lysine-specific demethylase REF6-like isoform X1
SwissprotQ5N7120.0JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBLM0RQK70.0M0RQK7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P08770_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53463246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.10.0relative of early flowering 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]