PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P08640_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 425aa    MW: 46896.4 Da    PI: 8.8012
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P08640_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.91.1e-102247227
                            -S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                            +++ C +++rtG C++G +C+++H+p
  GSMUA_Achr11P08640_001 22 REPDCTYYLRTGLCRFGITCRYNHPP 47
                            789*********************97 PP
2zf-CCCH38.22.4e-126892327
                            S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                            +++C f++rtGtCk+G++CkF+H++
  GSMUA_Achr11P08640_001 68 QPECEFYLRTGTCKFGATCKFHHPR 92
                            799********************96 PP
3zf-CCCH38.12.5e-12113138227
                             -S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                             ++++C +++++G+Ck+G++CkF+H++
  GSMUA_Achr11P08640_001 113 DEAECAYYMKNGECKFGNTCKFHHPQ 138
                             6899********************97 PP
4zf-CCCH39.49.8e-13272298127
                             --S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                             +++++C f+++tG CkyG+ CkF+H++
  GSMUA_Achr11P08640_001 272 PGQPECEFYLKTGDCKYGAACKFHHPR 298
                             5789*********************96 PP
5zf-CCCH35.22.1e-11319344227
                             -S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                              +++C f++r+G+Ck+G  CkF H++
  GSMUA_Achr11P08640_001 319 EEPICIFYSRYGICKFGTHCKFDHPM 344
                             579*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.7272048IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-62047IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-82247IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-52348IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.156593IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-56592IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-106892IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-66994IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-47192IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.699111139IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4111138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6113139IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-10113138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-4117137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.478271299IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-6271298IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-10273298IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6275301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-6277299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.995317345IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-5317344IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-5318344IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-8319344IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MWQMRMREIE SVESGPFPER PREPDCTYYL RTGLCRFGIT CRYNHPPNRQ MAIAAARIKG  60
GYPERVGQPE CEFYLRTGTC KFGATCKFHH PRDKAGIAGR VQLNVLGYPL RPDEAECAYY  120
MKNGECKFGN TCKFHHPQPN TMVSLCGSTV YPGVHSPTSG QQSYTGGLTN LSLSRASFIA  180
SPRWQGLSSY AQVIFPQGLV QVPSWNTFSG QLRSVSSSES QLHMPQTTPF YGTSRQSETT  240
TGVQGMIHSY RSGAIPLGQY VLARDNVFPV RPGQPECEFY LKTGDCKYGA ACKFHHPRER  300
LIPIPDCVLS PLGLPLRPEE PICIFYSRYG ICKFGTHCKF DHPMAAPMGI YAYSLATSSL  360
ADVAVARNLL ATSSGPPSFQ APLEVATGKS RRLLFSDSLQ IASGDERIKS EGSQATSSTG  420
KLSSF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009382899.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLM0RQJ40.0M0RQJ4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P08640_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-155zinc finger protein 1