PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr11P07020_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 299aa MW: 33603.1 Da PI: 7.2556 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.1 | 2.8e-07 | 44 | 64 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f+r G C +Gd C+FaHg GSMUA_Achr11P07020_001 44 PCPAFRR-GGCTRGDLCRFAHG 64 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0094 | 41 | 65 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.699 | 44 | 66 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-5 | 44 | 64 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-5 | 44 | 67 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 10 | 74 | 97 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 299 aa Download sequence Send to blast |
MFCFKVLPCT RAYVHDWTAC PFVHPGETAR RRDPIKYRYA AWFPCPAFRR GGCTRGDLCR 60 FAHGVFERWL HPTQYRTVMC RDGGRCARRV CFFAHTSEQL RAAPVLLRLP GLHDFYATGI 120 HIPFGESSAQ LIDQTHLVPP FAADISSPTR YDSDRLSPRP PQQQQHHSLY PSIDANVSKF 180 PSSLQGSALP ITPPDVSFRL GARDHQSPSP IFSWSSKWAA PCEVDEDEVL GGLLGRSPWA 240 EEPDVSWVQS LVGPPEVKVR NETRSSSAGT DTDECMTSCI CEAWLQECMQ IEPPPPPKH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018676098.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 30-like | ||||
Swissprot | P93755 | 1e-46 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | M0RQ32 | 0.0 | M0RQ32_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P07020_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1578 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G41900.1 | 8e-49 | CCCH-type zinc finger protein with ARM repeat domain |
Publications ? help Back to Top | |||
---|---|---|---|
|