PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P07020_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 299aa    MW: 33603.1 Da    PI: 7.2556
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P07020_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.8e-074464526
                            --SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                            +C+ f+r G C +Gd C+FaHg
  GSMUA_Achr11P07020_001 44 PCPAFRR-GGCTRGDLCRFAHG 64
                            7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00944165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.6994466IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-54464IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-54467IPR000571Zinc finger, CCCH-type
SMARTSM00356107497IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MFCFKVLPCT RAYVHDWTAC PFVHPGETAR RRDPIKYRYA AWFPCPAFRR GGCTRGDLCR  60
FAHGVFERWL HPTQYRTVMC RDGGRCARRV CFFAHTSEQL RAAPVLLRLP GLHDFYATGI  120
HIPFGESSAQ LIDQTHLVPP FAADISSPTR YDSDRLSPRP PQQQQHHSLY PSIDANVSKF  180
PSSLQGSALP ITPPDVSFRL GARDHQSPSP IFSWSSKWAA PCEVDEDEVL GGLLGRSPWA  240
EEPDVSWVQS LVGPPEVKVR NETRSSSAGT DTDECMTSCI CEAWLQECMQ IEPPPPPKH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018676098.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937551e-46C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLM0RQ320.0M0RQ32_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P07020_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.18e-49CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]