PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P27910_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 378aa    MW: 40726.6 Da    PI: 6.7711
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P27910_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.36.4e-09134155426
                             ---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                             + C++f++ G Ck+Gd C FaHg
  GSMUA_Achr10P27910_001 134 AACPDFRK-GGCKRGDACEFAHG 155
                             78******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.7E-5130156IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.178131157IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-7134155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5135157IPR000571Zinc finger, CCCH-type
SMARTSM0035619165188IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MMMVGGEGRH QRDPVVQVPP WSSPFEDAAV GVGYHLAAGG GGGGSGEYGL GDSALAAALQ  60
RYLPCNGEET VAEEDVEEPD AAVDVYSSDE FRMYEFKVRR CARGRSHDWT ECPFAHPGEK  120
ARRRDPRKYH YSGAACPDFR KGGCKRGDAC EFAHGVFECW LHPARYRTQP CKDGTACRRR  180
VCFFAHTADQ LRILPQQQQQ QTPTKPAVAG ESYDGSPLRQ QALETYLSKH LMSSSPTSTL  240
ISPPMSPPTS LNEIEFSLRQ LQLSKAKSSP GSWGLQVSSE AFGSPRGTAA GFRAGFGSLP  300
TTPTATSAAL GGGLGWFDGA DAGYAGGKEP VERVESGRAL RAKMFEKLSK ECVLERADAD  360
AAPSMPAPDV GWVSELVK
Functional Description ? help Back to Top
Source Description
UniProtInvolved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0961411e-113FP096141.1 Phyllostachys edulis cDNA clone: bphyem209h03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381212.10.0PREDICTED: zinc finger CCCH domain-containing protein 2-like
SwissprotQ9FU271e-123C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBLM0RM150.0M0RM15_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P27910_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.13e-83C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Mebel AM,Kislov VV,Hayashi M
    Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories.
    J Chem Phys, 2007. 126(20): p. 204310
    [PMID:17552765]
  3. Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T
    Anti-angiogenic function of tocotrienol.
    Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6
    [PMID:18296349]