PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr10P26160_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | G2-like | ||||||||
Protein Properties | Length: 428aa MW: 46452.7 Da PI: 6.8013 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 88.5 | 6.1e-28 | 155 | 209 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k++++WtpeLH+rFv+aveqL G++kA+P++ilelm++++Lt+++++SHLQkYR++ GSMUA_Achr10P26160_001 155 KAKVDWTPELHRRFVQAVEQL-GIDKAVPSRILELMGIDCLTRHNIASHLQKYRSH 209 6799*****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.031 | 152 | 211 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-27 | 152 | 212 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.24E-18 | 153 | 212 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.3E-27 | 155 | 209 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.8E-7 | 158 | 207 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0010638 | Biological Process | positive regulation of organelle organization | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MLAVEPLRGS SGEDRDGAMG SFSVADVDFA DEALLEDISF GDLFLGIDHG DVLPDLELDP 60 AEIFAEFSVG EEHSGSTTAW EAAEGMLGVD GASQDVVVAA LEEHNGGRGE EVVSAMTREE 120 SMVMPSRARP SSPDGNKGRT PSAAAAAKGS HRKRKAKVDW TPELHRRFVQ AVEQLGIDKA 180 VPSRILELMG IDCLTRHNIA SHLQKYRSHR KHLLAREAEA VSWSQRRQVY AAGAGAKRDI 240 NPWVAPTIGF VPPTPAAPPS AVQHFRPLHV WGHPTTEAPL VHMWLRHLAP RSPTVPWAPQ 300 PPPSPPDPAY WHHHYQRGSR EGWFPRAMTQ GTPCFAPPLP TARFPAPHVP GIAPHPMYRP 360 PPPVVTKRSS SQLHLDAHPS MESVDAAIGD VLAQPWLPLP LGLKSPSMDS VLVELQKKGV 420 QKVPPACG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 9e-16 | 153 | 207 | 3 | 57 | ARR10-B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. {ECO:0000269|PubMed:19808806}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00022 | PBM | Transfer from AT2G20570 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:11340194}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009381033.1 | 0.0 | PREDICTED: probable transcription factor GLK1 isoform X2 | ||||
Swissprot | Q5Z5I4 | 1e-101 | GLK1_ORYSJ; Probable transcription factor GLK1 | ||||
TrEMBL | M0RLJ0 | 0.0 | M0RLJ0_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P26160_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2415 | 38 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20570.1 | 3e-74 | GBF's pro-rich region-interacting factor 1 |
Publications ? help Back to Top | |||
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