PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr10P23650_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ARR-B | ||||||||
Protein Properties | Length: 434aa MW: 48795.5 Da PI: 7.8063 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.2 | 1.6e-27 | 195 | 248 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++r+ W+ +LH++Fv+av++L G ++A+Pk+il+lm+vkgLt+e+++SHLQkYR GSMUA_Achr10P23650_001 195 RQRVSWSADLHTHFVKAVNHL-GLDRAVPKKILDLMNVKGLTRENIASHLQKYRK 248 58*******************.********************************6 PP | |||||||
2 | Response_reg | 70.5 | 7e-24 | 20 | 129 | 1 | 108 |
EEEESSSH.HHHHHHHHHHH.HTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTH CS Response_reg 1 vlivdDep.lvrellrqale.kegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgee 83 vl vdD++ l+++ l+ ++ + +y v++++++ alell+e++ +D+++ D++mp+mdG++ll+ i e +lp+i+++ ++e GSMUA_Achr10P23650_001 20 VLAVDDDRvLIMNRLTLIFInDVQY-AVTATQHALTALELLRENKdnYDIVISDVQMPDMDGFKLLEIIGLEM-DLPVIMLSVKSET 104 6888555516777788877768888.***************888889********************996644.8************ PP HHHHHHHHTTESEEEESS--HHHHH CS Response_reg 84 edalealkaGakdflsKpfdpeelv 108 +++ + + Ga d+l+Kp+ e+l GSMUA_Achr10P23650_001 105 SYVMKGVLHGAVDYLVKPVRLEDLK 129 ********************99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 1.5E-120 | 1 | 431 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 2.1E-32 | 17 | 155 | No hit | No description |
SuperFamily | SSF52172 | 5.27E-28 | 17 | 144 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 3.9E-27 | 18 | 132 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 34.909 | 19 | 136 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 5.8E-21 | 20 | 129 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 3.15E-25 | 21 | 136 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-27 | 192 | 252 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.629 | 192 | 251 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.99E-18 | 193 | 252 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.1E-24 | 196 | 248 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.3E-7 | 197 | 247 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
MAECGAESSW KNEFPLGMRV LAVDDDRVLI MNRLTLIFIN DVQYAVTATQ HALTALELLR 60 ENKDNYDIVI SDVQMPDMDG FKLLEIIGLE MDLPVIMLSV KSETSYVMKG VLHGAVDYLV 120 KPVRLEDLKL IWKHVIKKSL LVKKESNDPS NTHIQKQKAD NDRYSITTRK SMDKIKEKED 180 SAHENSDGEP SKQKRQRVSW SADLHTHFVK AVNHLGLDRA VPKKILDLMN VKGLTRENIA 240 SHLQKYRKTL KRNGIGLQQQ HCGGPHPHGF GVNSPGSVIL SFNPQFHAKR NFLEEHGLNE 300 YQKDSMMISS GPSWYTNSSV APSPFQHFAS FPQAGHFKME QDGYSSNSMG TERAYPLSGF 360 KNLTYQSLRP TLDQVECSMK NFHQNSLIVG GISCPDSSSQ LHHPPNENSF ETLLENNNAG 420 LDASAKLNPV MPSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-20 | 191 | 252 | 1 | 62 | ARR10-B |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 191 | 196 | KQKRQR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018674614.1 | 0.0 | PREDICTED: two-component response regulator ARR10-like isoform X2 | ||||
Swissprot | A2X1N2 | 1e-82 | ORR24_ORYSI; Two-component response regulator ORR24 | ||||
Swissprot | Q6H805 | 1e-82 | ORR24_ORYSJ; Two-component response regulator ORR24 | ||||
TrEMBL | M0RKU0 | 0.0 | M0RKU0_MUSAM; Two-component response regulator | ||||
STRING | GSMUA_Achr10P23650_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8147 | 34 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31920.1 | 4e-80 | response regulator 10 |
Publications ? help Back to Top | |||
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