PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr10P12590_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | G2-like | ||||||||
Protein Properties | Length: 240aa MW: 25986.5 Da PI: 9.9921 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97.1 | 1.3e-30 | 60 | 113 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl GSMUA_Achr10P12590_001 60 RPRLVWTPQLHKRFVDAVAHL-GINNAVPKTIMQLMGVDGLTRENVASHLQKYRL 113 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.25E-20 | 57 | 117 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.818 | 57 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-31 | 59 | 118 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-24 | 61 | 113 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-8 | 63 | 112 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MPLSQALITP DLALAFGIPS SSSAPTTGAD PAPDDLLRGP HSSDLNGGRG EEEPARTLKR 60 PRLVWTPQLH KRFVDAVAHL GINNAVPKTI MQLMGVDGLT RENVASHLQK YRLYLKRMQM 120 QGLNPSSPSS APQPFLGRMP VAALQHHQQN TAPVQLQQQH QYYHQTHLGH FPGSGPGFLT 180 RNMQPPPVTH RTMGLVPGMG SAPVPPHSTA AAYLNTSEWS GMGEGGARRK ELTLFPTGED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 2e-32 | 60 | 116 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX620518 | 1e-72 | JX620518.1 Gossypium hirsutum clone NBRI_GE66774 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009420974.1 | 1e-175 | PREDICTED: transcription factor PCL1-like | ||||
Swissprot | O22210 | 1e-41 | MYBC1_ARATH; Transcription factor MYBC1 | ||||
TrEMBL | M0RHN5 | 1e-174 | M0RHN5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P12590_001 | 1e-175 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1620 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05090.1 | 5e-50 | G2-like family protein |
Publications ? help Back to Top | |||
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