PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P07470_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 399aa    MW: 43277.7 Da    PI: 6.5107
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P07470_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.82e-13238284455
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +h e+Er+RR+++N++f  Lr+++P+       +++Ka+ L  Av YIk+L+
  GSMUA_Achr10P07470_001 238 NHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLSDAVAYIKELE 284
                             899***********************6.....4****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.5E-82266IPR025610Transcription factor MYC/MYB N-terminal
PfamPF142151.0E-2167168IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.422234283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-18237302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-18238301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.10E-15238287No hitNo description
PfamPF000106.3E-11238284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-16240289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDELIISPSC SSSLNAPAAA DLQYRLQSFL LARPEWWAYA IFWRASPDHR VLSFGDGNFR  60
GARKSRGSDD SVDDGEWFYV VSLSRSFVVA RDGDANPVPA RVYGSLAPVW LAGVRALQAC  120
GCDRTREAQL HGIETLACFP VPGGVLELGS ADYIAENWVL VQQVSAIFNT TPHDAAIAGA  180
EPTAAPAPLS AARKDGAGLS SSVDSEHSDS DCHLLAERRR PKKRGRKQES GSHEGPANHV  240
EAERQRREKL NHRFYALRSV VPNVSRMDKA SLLSDAVAYI KELEAKVDKL EAEAKTAMKE  300
TTTSATTHGT TTTTTSETAM EVEVKLLGAE ALIRAQSDDR NHPPARLMVA LRDLGLHVHH  360
ASVSCVKESV LQDVVVEVPC ELQGHEGLRA ALLAKLQTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-23234293463Transcription factor MYC2
5gnj_B2e-23234293463Transcription factor MYC2
5gnj_E2e-23234293463Transcription factor MYC2
5gnj_F2e-23234293463Transcription factor MYC2
5gnj_G2e-23234293463Transcription factor MYC2
5gnj_I2e-23234293463Transcription factor MYC2
5gnj_M2e-23234293463Transcription factor MYC2
5gnj_N2e-23234293463Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218226RRPKKRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009420803.10.0PREDICTED: transcription factor MYC2-like
TrEMBLM0RG730.0M0RG73_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P07470_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.12e-52bHLH family protein