PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P01440_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bZIP

Protein Properties

Length: 604aa MW: 64918.2 Da PI: 8.6661

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P01440_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	39.6	1.2e-12	153	214	1	62
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 e++++r r+++NRe+A+ sRqRKk+++eeLeekv ++ + +L +++ e +l+++ GSMUA_Achr10P01440_001 153 EEDDRRKTRLIRNRESAQLSRQRKKQYVEELEEKVRAMHSTINELNAKISYFMAENVSLRQQ 214 7899***********************************99999999999888888777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00170	7.2E-11	153	214	IPR004827	Basic-leucine zipper domain
SMART	SM00338	1.2E-16	153	217	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.507	155	215	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.63E-13	157	215	No hit	No description
Gene3D	G3DSA:1.20.5.170	9.1E-17	157	215	No hit	No description
CDD	cd14704	1.05E-21	158	208	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 604 aa Download sequence Send to blast
MAEPSLVDPF DSSNPHPLFD PALSPCDLFP PPSDLPFGDD FDLDIDFDFS VDDFLRSTEN 60 HLSTPSDVPP DPSPGDGSGV FSSSSSPDHQ SSRNSGPASP GSGNSSSGSG VVDREVKVEN 120 EKSLKRKEGC FNSNPNANPR GGKLQRSEAI GNEEDDRRKT RLIRNRESAQ LSRQRKKQYV 180 EELEEKVRAM HSTINELNAK ISYFMAENVS LRQQLGGNGA APAVYPPSGP MPSTHFPWVP 240 GYAFRPQGSP VPLVPIPRLK PQQPAHAPRA KKSETKTKKV ASVSLLGLML IILVFGILPG 300 VHLRHRGTRD YVGVIKGGIV NEPRGMVLSV TGRGSWPSTG SGGSVFTQNC SETLPALLYV 360 PRNGKHVKID GNLIIHSVLA GEKAMARSKE RRSSAEESKD TALAIAGNMM SALAVPKSER 420 EADHSIADDA YAKNLKSVSA DGPLQQWFRE GMAGPMLSSG MCTEVFQFDI SPTSSSSIIP 480 ATSIMRSTSV ANASEDLPSA SAQQGRIKNR RILFPETVPL NGTTNRNGTQ FGKPSKSSNF 540 DDTKPVSSVV VSILADPKEA GNGDGDGMIS RKSLSRIFVV VLLDSVKYVT YSCVLPFKTP 600 APIL

Sequence ? help Back to Top

Protein Sequence Length: 604 aa Download sequence Send to blast

MAEPSLVDPF DSSNPHPLFD PALSPCDLFP PPSDLPFGDD FDLDIDFDFS VDDFLRSTEN  60
HLSTPSDVPP DPSPGDGSGV FSSSSSPDHQ SSRNSGPASP GSGNSSSGSG VVDREVKVEN  120
EKSLKRKEGC FNSNPNANPR GGKLQRSEAI GNEEDDRRKT RLIRNRESAQ LSRQRKKQYV  180
EELEEKVRAM HSTINELNAK ISYFMAENVS LRQQLGGNGA APAVYPPSGP MPSTHFPWVP  240
GYAFRPQGSP VPLVPIPRLK PQQPAHAPRA KKSETKTKKV ASVSLLGLML IILVFGILPG  300
VHLRHRGTRD YVGVIKGGIV NEPRGMVLSV TGRGSWPSTG SGGSVFTQNC SETLPALLYV  360
PRNGKHVKID GNLIIHSVLA GEKAMARSKE RRSSAEESKD TALAIAGNMM SALAVPKSER  420
EADHSIADDA YAKNLKSVSA DGPLQQWFRE GMAGPMLSSG MCTEVFQFDI SPTSSSSIIP  480
ATSIMRSTSV ANASEDLPSA SAQQGRIKNR RILFPETVPL NGTTNRNGTQ FGKPSKSSNF  540
DDTKPVSSVV VSILADPKEA GNGDGDGMIS RKSLSRIFVV VLLDSVKYVT YSCVLPFKTP  600
APIL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269\|PubMed:22050533, ECO:0000269\|PubMed:22084314}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000269\|PubMed:22084314}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009419845.1	0.0	PREDICTED: bZIP transcription factor 17
Swissprot	Q6AU90	1e-125	BZP39_ORYSJ; bZIP transcription factor 39
TrEMBL	M0REH1	0.0	M0REH1_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P01440_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8228	35	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56660.1	7e-95	basic region/leucine zipper motif protein 49

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response. Plant Cell Physiol., 2012. 53(1): p. 144-53 [PMID:22084314] Ohta M, et al. Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants. J. Exp. Bot., 2013. 64(18): p. 5429-41 [PMID:24153418] Cheng Q, et al. An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice. Plant Biol (Stuttg), 2015. 17(2): p. 419-29 [PMID:25255693]