PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00156156001
Common NameGSBRNA2T00156156001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 579aa    MW: 61035.8 Da    PI: 9.7024
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00156156001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.32.7e-11203247144
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                          r++W++eEd  l+ avkq+G g+W+ Iar     +Rt+ q+  rw
  GSBRNA2T00156156001 203 RQKWSAEEDADLIAAVKQFGEGNWAHIARGEFrGRRTASQLSQRW 247
                          89**************************96555799**9999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.2E-14198252IPR009057Homeodomain-like
PROSITE profilePS5129415.2198255IPR017930Myb domain
SuperFamilySSF466892.66E-12200253IPR009057Homeodomain-like
SMARTSM007171.1E-8202253IPR001005SANT/Myb domain
PfamPF002491.4E-8203247IPR001005SANT/Myb domain
CDDcd116606.05E-13204252No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MVESSSNKRR KITISEGDIA TLLQRYDAKT ILRLLQEMAF YSDVEKMDWN EMVRKTTTGI  60
TNAREYQMLW RHLSYRDPLL HVVEDDAHPL DDDSDMECEL EASPEVSVEA SVEAVAHVKV  120
IAASYVPRDS DILDEATSEA PLTINIPYAL PEGTQEPSES PWLSRGMNIT FPVCLQKVTS  180
TEGILNGNGS ASSSSMPSQR KTRQKWSAEE DADLIAAVKQ FGEGNWAHIA RGEFRGRRTA  240
SQLSQRWPHL RRRYDTSTSA SQSQIAVNHA LSLALGNRPP SKKVAVGTQG SGGRPSQGQQ  300
QSKPVVQTLS RAATSDPASK SQVGVNKTTA RSTSRADLMV TANSAAAAAC MGVVLTAPSA  360
PKVEVCVPRP SGSLVMPKVE PGKTVAASSI TKAVGPASTR PLANGNLKPV THSPSSIKPP  420
LVGSRSEGST MFSASTHLAT ASKIVSNQRV SAASVPATVL PLKLTVDTVI CKPDGGHKEQ  480
ARGDGASSVV AIQSNKMTAT NSEISRGKQA ATHAQTAVLG AANQSLVDKT AVPSNSGAGS  540
QSKSKCEVNN KVGSVVTVSK ACGKPPEVAT VRGTGQGV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00156156001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013640976.10.0uncharacterized protein LOC106346253
TrEMBLA0A3P5YWC80.0A0A3P5YWC8_BRACM; Uncharacterized protein
STRINGBra019998.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.10.0MYB_related family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]