PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00155170001
Common NameGSBRNA2T00155170001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 247aa    MW: 27917.6 Da    PI: 4.8828
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00155170001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.43.5e-10117207282
                          EEE-..-HHHHT.T-EE--HHH.HTT...........---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.T CS
                   B3   2 fkvltpsdvlks.grlvlpkkfaeeh...........ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLk.e 76 
                          +k+lt sdv +  +rl+l k+ +++                +e+ +++++ ++g  +++++k+  ++ + + vlt+GWk+Fv+  +L+  
  GSBRNA2T00155170001 117 KKQLTMSDVENGqCRLMLGKQQVQKKmhpllehseipL-G-TEGLDVSVYGPNGevQTMKFKM--WGED-TPVLTSGWKDFVDKYDLEkH 201
                          5899999999887**********999999987766632.2.26779********666666666..9997.679**************978 PP

                          T-EEEE CS
                   B3  77 gDfvvF 82 
                          +Df+++
  GSBRNA2T00155170001 202 RDFLTI 207
                          899986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100172.19E-14116211No hitNo description
SMARTSM010196.7E-5116222IPR003340B3 DNA binding domain
SuperFamilySSF1019368.63E-14117221IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-13117213IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MVTSKEETTS VVITQEDREA AETLIKLSQD TRYQPVEEED AAPSSTLLLQ QCKAKEKQHS  60
KKDDKISMES TKGKTEVDDT EETLMILQEW SHTKPDPVEK IFSGDADVAE LFSEPIKKQL  120
TMSDVENGQC RLMLGKQQVQ KKMHPLLEHS EIPLGTEGLD VSVYGPNGEV QTMKFKMWGE  180
DTPVLTSGWK DFVDKYDLEK HRDFLTIWMF RHRVTRGICF AIDSTSFSVT GPLSSRISKS  240
VFPNPN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00155170001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325720.0AC232572.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS005G02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635666.10.0PREDICTED: putative B3 domain-containing protein At4g03160
SwissprotQ9ZR141e-52Y4317_ARATH; Putative B3 domain-containing protein At4g03170
TrEMBLA0A0D3C5B70.0A0A0D3C5B7_BRAOL; Uncharacterized protein
STRINGBo4g188830.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21031835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.15e-55B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]