PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00154116001 | ||||||||
Common Name | GSBRNA2T00154116001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 336aa MW: 37825.4 Da PI: 6.523 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 155.6 | 2.2e-48 | 22 | 147 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 pGf+F+Ptd el+++yLk+k++g + ++ +vi+e+diy++ePwdLp k++ ++++ew+fF+ r kky++g++++r+tk gyWk tgk++ GSBRNA2T00154116001 22 FPGFKFSPTDVELISYYLKRKMDGLERSV-QVIPETDIYSFEPWDLPdKSIVKSDTEWFFFCARGKKYPHGSQNRRTTKMGYWKVTGKER 110 69************************999.99***************778888999********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +v+s +++++g+k+tLvf+ grapkg++t+W+mhey + GSBRNA2T00154116001 111 DVKS-SSQVIGTKRTLVFHIGRAPKGQRTEWLMHEYCM 147 ****.999****************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.49E-54 | 11 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 50.582 | 21 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.0E-24 | 23 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MEAAAVGVSK DMAASVEAST VFPGFKFSPT DVELISYYLK RKMDGLERSV QVIPETDIYS 60 FEPWDLPDKS IVKSDTEWFF FCARGKKYPH GSQNRRTTKM GYWKVTGKER DVKSSSQVIG 120 TKRTLVFHIG RAPKGQRTEW LMHEYCMKGG VYMDDALVVC RLRRNREFRT CTSQKAPPEP 180 HLAADKHMIL QNGAASSGSP VDFYLAGESG DNHLTETPEN LQVETEEDFY GDILRDEIIN 240 LDEVVMSGKT PNEVPTLESA SMAIRILPLP NMIDRQMASV LEEIPSQKKK GKGISATEPL 300 SSCFMGVYSI KWVNRVRWDV IIVVVGLIVM LFYQE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-41 | 23 | 166 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-41 | 23 | 166 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-41 | 23 | 166 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-41 | 23 | 166 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-41 | 23 | 166 | 22 | 169 | NAC domain-containing protein 19 |
3swm_B | 4e-41 | 23 | 166 | 22 | 169 | NAC domain-containing protein 19 |
3swm_C | 4e-41 | 23 | 166 | 22 | 169 | NAC domain-containing protein 19 |
3swm_D | 4e-41 | 23 | 166 | 22 | 169 | NAC domain-containing protein 19 |
3swp_A | 4e-41 | 23 | 166 | 22 | 169 | NAC domain-containing protein 19 |
3swp_B | 4e-41 | 23 | 166 | 22 | 169 | NAC domain-containing protein 19 |
3swp_C | 4e-41 | 23 | 166 | 22 | 169 | NAC domain-containing protein 19 |
3swp_D | 4e-41 | 23 | 166 | 22 | 169 | NAC domain-containing protein 19 |
4dul_A | 5e-41 | 23 | 166 | 19 | 166 | NAC domain-containing protein 19 |
4dul_B | 5e-41 | 23 | 166 | 19 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in plant cell division. {ECO:0000269|PubMed:16803883}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00154116001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013667202.1 | 0.0 | NAC domain-containing protein 89 | ||||
Swissprot | Q94F58 | 0.0 | NAC89_ARATH; NAC domain-containing protein 89 | ||||
TrEMBL | A0A397XKM6 | 0.0 | A0A397XKM6_BRACM; Uncharacterized protein | ||||
STRING | Bra002403.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4309 | 23 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22290.1 | 0.0 | NAC domain containing protein 89 |
Publications ? help Back to Top | |||
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